View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5688_high_4 (Length: 315)

Name: NF5688_high_4
Description: NF5688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5688_high_4
NF5688_high_4
[»] chr2 (11 HSPs)
chr2 (13-297)||(19870847-19871131)
chr2 (13-297)||(19875748-19876032)
chr2 (13-297)||(19865946-19866230)
chr2 (22-151)||(33226575-33226707)
chr2 (22-148)||(43559709-43559838)
chr2 (21-149)||(45040023-45040154)
chr2 (22-153)||(18061070-18061203)
chr2 (82-151)||(45516589-45516658)
chr2 (13-148)||(29686086-29686223)
chr2 (62-120)||(21017196-21017254)
chr2 (15-59)||(5608577-5608621)
[»] chr3 (13 HSPs)
chr3 (13-297)||(45483565-45483849)
chr3 (22-188)||(29952761-29952935)
chr3 (22-188)||(30001915-30002089)
chr3 (13-104)||(33087858-33087951)
chr3 (15-119)||(28521533-28521640)
chr3 (13-153)||(39650481-39650624)
chr3 (13-119)||(28050707-28050816)
chr3 (95-153)||(33087779-33087837)
chr3 (62-152)||(49754262-49754352)
chr3 (14-149)||(26445992-26446131)
chr3 (13-138)||(28146745-28146875)
chr3 (13-120)||(46091783-46091894)
chr3 (156-188)||(49754370-49754402)
[»] chr8 (8 HSPs)
chr8 (22-153)||(42664094-42664228)
chr8 (13-147)||(33828280-33828417)
chr8 (13-116)||(16366771-16366877)
chr8 (13-153)||(41877490-41877635)
chr8 (14-153)||(29191038-29191181)
chr8 (13-115)||(10207934-10208035)
chr8 (21-119)||(25246942-25247041)
chr8 (88-148)||(36734666-36734726)
[»] chr1 (5 HSPs)
chr1 (13-153)||(44508162-44508305)
chr1 (29-152)||(41335963-41336089)
chr1 (21-153)||(7093605-7093741)
chr1 (22-153)||(15962385-15962520)
chr1 (21-148)||(31067033-31067161)
[»] chr5 (6 HSPs)
chr5 (22-153)||(29790650-29790784)
chr5 (13-148)||(15471024-15471162)
chr5 (13-148)||(14144833-14144974)
chr5 (14-153)||(35951869-35952012)
chr5 (21-152)||(33140249-33140382)
chr5 (13-153)||(3707322-3707466)
[»] chr4 (8 HSPs)
chr4 (13-153)||(47668849-47668992)
chr4 (13-153)||(55250518-55250661)
chr4 (25-153)||(20447709-20447840)
chr4 (22-153)||(35466492-35466626)
chr4 (21-149)||(1101032-1101163)
chr4 (13-121)||(29857376-29857487)
chr4 (13-115)||(46964031-46964134)
chr4 (87-153)||(1838867-1838934)
[»] chr6 (3 HSPs)
chr6 (24-152)||(20921404-20921534)
chr6 (63-152)||(20902845-20902934)
chr6 (23-151)||(4017129-4017259)
[»] scaffold0005 (1 HSPs)
scaffold0005 (13-138)||(270311-270439)
[»] chr7 (4 HSPs)
chr7 (82-153)||(34821051-34821122)
chr7 (13-148)||(19910173-19910308)
chr7 (21-119)||(47235954-47236053)
chr7 (13-64)||(27705380-27705431)
[»] scaffold0257 (1 HSPs)
scaffold0257 (13-119)||(16434-16542)
[»] scaffold0406 (1 HSPs)
scaffold0406 (21-149)||(12597-12728)


Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 19870847 - 19871131
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattatagataaatttgacttaaaacttcatagagcacaacttttataaataattattgttagatttta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19870847 aaaatatagataatctatttagtttagtatcaattatagataaatttgacttaaaacttcatagagcacaacttttataaataattattgttagatttta 19870946  T
Q  113 ttttctttactgtcgtttcattaaatataagtaaaaattatcgttattgattaagttcaatatattagtttttaaannnnnnnnnnnntttttgtatttg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||    
T  19870947 ttttctttactgtcgtttcattaaatataagtaaaaattatcgttattgattaagttcaatatattagtttttaaaatatatatatattttttgtatttg 19871046  T
Q  213 gcctcctcataaatattgtgctagcttcgccgttttgcagagtacttcagactgatcataccaccatgtctagaatggtggtatc 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19871047 gcctcctcataaatattgtgctagcttcgccgttttgcagagtacttcagactgatcataccaccatgtctagaatggtggtatc 19871131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 19875748 - 19876032
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattatagataaatttgacttaaaacttcatagagcacaacttttataaataattattgttagatttta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19875748 aaaatatagataatctatttagtttagtatcaattatagataaatttgacttaaaacttcatagagcacaacttttataaataattattgttagatttta 19875847  T
Q  113 ttttctttactgtcgtttcattaaatataagtaaaaattatcgttattgattaagttcaatatattagtttttaaannnnnnnnnnnntttttgtatttg 212  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||            ||||||||||||    
T  19875848 ttttctttactgtcgtttcattaaatataagtaaaagttatcgttattgattaagttcaatatattagtttttaaaatatatatatattttttgtatttg 19875947  T
Q  213 gcctcctcataaatattgtgctagcttcgccgttttgcagagtacttcagactgatcataccaccatgtctagaatggtggtatc 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19875948 gcctcctcataaatattgtgctagcttcgccgttttgcagagtacttcagactgatcataccaccatgtctagaatggtggtatc 19876032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 19865946 - 19866230
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattatagataaatttgacttaaaacttcatagagcacaacttttataaataattattgttagatttta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19865946 aaaatatagataatctatttagtttagtatcaattatagataaatttgacttaaaacttcatagagcacaacttttataaataattattgttagatttta 19866045  T
Q  113 ttttctttactgtcgtttcattaaatataagtaaaaattatcgttattgattaagttcaatatattagtttttaaannnnnnnnnnnntttttgtatttg 212  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||            ||||||||||||    
T  19866046 ttttctttactgtcgtttcattaaatataagtaaaatttatcgttattgattaagttcaatatattagtttttaaaatatatatatattttttgtatttg 19866145  T
Q  213 gcctcctcataaatattgtgctagcttcgccgttttgcagagtacttcagactgatcataccaccatgtctagaatggtggtatc 297  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19866146 gcctcctcgtaaatattgtgctagcttcgccgttttgcagagtacttcagactgatcataccaccatgtctagaatggtggtatc 19866230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 22 - 151
Target Start/End: Complemental strand, 33226707 - 33226575
Alignment:
Q  22 ataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttagattttattttct 118  Q
    ||||||||||||||||||| ||||||||| |||||||||||||   |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33226707 ataatctatttagtttagtgtcaattataaataaatttgacttgttaaaacttcatagagtacaacttttataaataattattgttagattttattttct 33226608  T
Q  119 ttactgtcgtttcattaaatataagtaaaaatt 151  Q
    | | |||||||||||||||||||||||||||||    
T  33226607 tcattgtcgtttcattaaatataagtaaaaatt 33226575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 22 - 148
Target Start/End: Original strand, 43559709 - 43559838
Alignment:
Q  22 ataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttagattttattttct 118  Q
    |||||||| |||||||||| ||||||||| |||||||||||||   ||||||||||| || |||||||||||||||||||||||||| ||||||||||||    
T  43559709 ataatctacttagtttagtgtcaattataaataaatttgacttgttaaaacttcataaagtacaacttttataaataattattgttaaattttattttct 43559808  T
Q  119 ttactgtcgtttcattaaatataagtaaaa 148  Q
    |   ||||| ||||||||||||||||||||    
T  43559809 tcgttgtcgcttcattaaatataagtaaaa 43559838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 45040154 - 45040023
Alignment:
Q  21 gataatctatttagtttagtatcaattatagataaatttg---acttaaaacttcatagagcacaacttttataaataattattgttagattttattttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||    ||||||||| |||||||| ||  ||||| |||||| ||||||||  ||||||||||    
T  45040154 gataatctatttagtttagtatcaattatagataaatttgtcttcttaaaactccatagagctcatattttacaaataactattgttaccttttattttc 45040055  T
Q  118 tttactgtcgtttcattaaatataagtaaaaa 149  Q
     |   ||| |||||| ||||||||||||||||    
T  45040054 atcgttgttgtttcactaaatataagtaaaaa 45040023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 18061203 - 18061070
Alignment:
Q  22 ataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttagattttattttct 118  Q
    ||||||||||||||||||| || |||||  |||||||||||||   ||||||  ||| ||| ||| |||||||||||| ||||||||| |||| ||||||    
T  18061203 ataatctatttagtttagtgtccattatgaataaatttgacttcttaaaactctatatagctcaaattttataaataactattgttagcttttgttttct 18061104  T
Q  119 ttactgtcgtttcattaaatataagtaaaaattat 153  Q
    ||   || |||||||||| ||||||||||||||||    
T  18061103 ttgtcgt-gtttcattaagtataagtaaaaattat 18061070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 45516589 - 45516658
Alignment:
Q  82 aacttttataaataattattgttagattttattttctttactgtcgtttcattaaatataagtaaaaatt 151  Q
    |||| |||||||||| ||||||||| |||||||||||||  | ||||||||||  |||||||||||||||    
T  45516589 aactgttataaataactattgttagtttttattttctttgttttcgtttcatttgatataagtaaaaatt 45516658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 29686223 - 29686086
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttagatt 109  Q
    ||||||| ||||||||||||| |||||| |||||||| |||||| |||||||   ||||||   || ||  |||||||||||| ||| |||||||| | |    
T  29686223 aaaatattgataatctatttattttagtgtcaattatggataaaattgacttctaaaaactctttaaaggtcaacttttataagtaactattgtta-act 29686125  T
Q  110 ttattttctttactgtcgtttcattaaatataagtaaaa 148  Q
    |||||||||||  ||  ||||||| |||||| |||||||    
T  29686124 ttattttctttgttgaagtttcatcaaatatgagtaaaa 29686086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 21017254 - 21017196
Alignment:
Q  62 cttaaaacttcatagagcacaacttttataaataattattgttagattttattttcttt 120  Q
    ||||||||| |||| | | |||||||||||||||| ||||||||| |||||||||||||    
T  21017254 cttaaaactccatatatctcaacttttataaataactattgttagcttttattttcttt 21017196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 5608577 - 5608621
Alignment:
Q  15 aatatagataatctatttagtttagtatcaattatagataaattt 59  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||||    
T  5608577 aatattgataatatatttagtttagtgtcaattatagataaattt 5608621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 45483849 - 45483565
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattatagataaatttgacttaaaacttcatagagcacaacttttataaataattattgttagatttta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45483849 aaaatatagataatctatttagtttagtatcaattatagataaatt-gacttaaaacttcatagagcacaacttttataaataattattgttagatttta 45483751  T
Q  113 ttttctttactgtcgtttcattaaatataagtaaaaattatcgttattgattaagttcaatatattagttttt-aaannnnnnnnnnnntttttgtattt 211  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||            |||||||||||    
T  45483750 ttttctttgctgtcgtttcattaaatataagtaaaaattatcgttattgattaagttcaatatattagtttttaaaatatatatatatttttttgtattt 45483651  T
Q  212 ggcctcctcataaatattgtgctagcttcgccgttttgcagagtacttcagactgatcataccaccatgtctagaatggtggtatc 297  Q
    |||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  45483650 ggcctcctcataaatattgtgctagcttcgccgttgggcagagtgcttcagactgatcacaccaccatgtctagaatggtggtatc 45483565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 29952935 - 29952761
Alignment:
Q  22 ataatctatttagtttagtatcaattatagataaatttgacttaa---aacttcatagagcacaacttttataaataattattgttaga-ttttattttc 117  Q
    ||||| |||||||||||||  ||||||| ||||||||| | || |   |||| |||| ||| ||| ||||||||||||||||||||  | ||||||||||    
T  29952935 ataatatatttagtttagtgacaattatggataaatttaagttcatacaactccataaagctcaaattttataaataattattgtttaacttttattttc 29952836  T
Q  118 tttactgtcgtttcattaaatataagtaaaaattatcg----ttattgattaagttcaatatattagtttttaaa 188  Q
    ||   ||||||||| ||||||||||||||||||||| |    |||||||||||||| ||||||||||||||||||    
T  29952835 ttcgttgtcgtttcgttaaatataagtaaaaattattgttaattattgattaagtttaatatattagtttttaaa 29952761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 30002089 - 30001915
Alignment:
Q  22 ataatctatttagtttagtatcaattatagataaatttgacttaa---aacttcatagagcacaacttttataaataattattgttaga-ttttattttc 117  Q
    ||||| |||||||||||||  ||||||| ||||||||| | || |   |||| |||| ||| ||| ||||||||||||||||||||  | ||||||||||    
T  30002089 ataatatatttagtttagtgacaattatggataaatttaagttcatacaactccataaagctcaaattttataaataattattgtttaacttttattttc 30001990  T
Q  118 tttactgtcgtttcattaaatataagtaaaaattatcg----ttattgattaagttcaatatattagtttttaaa 188  Q
    ||   ||||||||| ||||||||||||||||||||| |    |||||||||||||| ||||||||||||||||||    
T  30001989 ttcgttgtcgtttcgttaaatataagtaaaaattattgttaattattgattaagtttaatatattagtttttaaa 30001915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 33087951 - 33087858
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattatagataaatttga---cttaaaacttcatagagcacaacttttataaataattattgtt 104  Q
    ||||||| |||||||||||||||||||| ||||||||||||||| ||||   |||||||||||||| ||| ||||||||||||||||||||||||    
T  33087951 aaaatattgataatctatttagtttagtgtcaattatagataaa-ttgacttcttaaaacttcataaagctcaacttttataaataattattgtt 33087858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 28521533 - 28521640
Alignment:
Q  15 aatatagataatctatttagtttagtatcaattatagataaatttga---cttaaaacttcatagagcacaacttttataaataattattgttagatttt 111  Q
    ||||| |||||||||||||||||||||||||||||  ||||||||||   ||||||| |||||||||| ||| |||| || |||| ||||||||| ||||    
T  28521533 aatattgataatctatttagtttagtatcaattatgaataaatttgacttcttaaaatttcatagagctcaatttttgtagataactattgttagttttt 28521632  T
Q  112 attttctt 119  Q
    ||||||||    
T  28521633 attttctt 28521640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 39650481 - 39650624
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattatagataaatttga---cttaaaacttcatagagcacaacttttataaataattattgttagatt 109  Q
    ||||||| ||||||||||||| |||||  |||||||||||| |||||||   |||||||||| | ||||  ||||||||||||| |||  ||||||||||    
T  39650481 aaaatattgataatctatttaatttagcgtcaattatagatgaatttgacttcttaaaactttacagagttcaacttttataaacaatctttgttagatt 39650580  T
Q  110 ttattttctttactgtcgtttcattaaatataagtaaaaattat 153  Q
    ||| ||||||   ||  ||||||||||||||||| |||||||||    
T  39650581 ttagtttcttcgttgctgtttcattaaatataagcaaaaattat 39650624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 28050816 - 28050707
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattatagataaatttga---cttaaaacttcatagagcacaacttttataaataattattgttagatt 109  Q
    ||||||| |||||||||||||||||| | || ||||||||||||||| |   |||||| ||||||||| | ||||||||||| |||| ||||| ||| ||    
T  28050816 aaaatatggataatctatttagtttaatgtctattatagataaatttaatttcttaaatcttcatagaactcaacttttatagataactattggtagctt 28050717  T
Q  110 ttattttctt 119  Q
    ||||||||||    
T  28050716 ttattttctt 28050707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 33087837 - 33087779
Alignment:
Q  95 aattattgttagattttattttctttactgtcgtttcattaaatataagtaaaaattat 153  Q
    ||||||||||||||||||||||||||  |||||||| ||||||||||||||||| ||||    
T  33087837 aattattgttagattttattttctttgttgtcgttttattaaatataagtaaaagttat 33087779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 152
Target Start/End: Original strand, 49754262 - 49754352
Alignment:
Q  62 cttaaaacttcatagagcacaacttttataaataattattgttagattttattttctttactgtcgtttcattaaatataagtaaaaatta 152  Q
    |||||||||| || |||  ||||||||||||||||||||| |||||||||||||||||   |  | ||||||| |||||||||||||||||    
T  49754262 cttaaaactttatggagttcaacttttataaataattattcttagattttattttcttcgttaacatttcattcaatataagtaaaaatta 49754352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 26445992 - 26446131
Alignment:
Q  14 aaatatagataatctatttagtttagtatcaattatagataaatttga---cttaaaacttcatagagcacaacttttataaataattattg-ttagatt 109  Q
    |||||| |||||| |||||||||| || |||||||| ||||||||| |   |||| ||||  ||| ||| |||||||||||||||||||||| |||  ||    
T  26445992 aaatattgataatatatttagtttggtgtcaattatggataaatttaagttcttacaactctataaagctcaacttttataaataattattgtttaactt 26446091  T
Q  110 ttattttctttactgtcgtttcattaaatataagtaaaaa 149  Q
    ||||||||||   ||| | |||||||||||| ||||||||    
T  26446092 ttattttcttcgttgttgattcattaaatatgagtaaaaa 26446131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 28146875 - 28146745
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcac--aacttttataaataattattgttaga 107  Q
    ||||||| |||| |||| |||||||||| |||||||| ||||| ||||||||   ||||||||||| || ||  || ||||||| |||| |||||||||     
T  28146875 aaaatattgatattctaattagtttagtgtcaattatggataactttgacttctgaaaacttcatatagaactcaaattttatagataactattgttagc 28146776  T
Q  108 ttttattttctttactgtcgtttcattaaat 138  Q
    ||||||||||||   |||| |||||||||||    
T  28146775 ttttattttcttccttgtcatttcattaaat 28146745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 46091894 - 46091783
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttag-at 108  Q
    ||||||| ||||||| |||||||||||| | |||||| ||||||||||||||   || ||| | |||||| |||| ||||||||||| |||||||||  |    
T  46091894 aaaatattgataatccatttagtttagtgttaattatggataaatttgacttctaaatactccttagagctcaacatttataaataactattgttagctt 46091795  T
Q  109 tttattttcttt 120  Q
    ||||||||||||    
T  46091794 tttattttcttt 46091783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 49754370 - 49754402
Alignment:
Q  156 ttattgattaagttcaatatattagtttttaaa 188  Q
    |||||||||||||| ||||||||||||||||||    
T  49754370 ttattgattaagtttaatatattagtttttaaa 49754402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 42664228 - 42664094
Alignment:
Q  22 ataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttagattttattttct 118  Q
    ||||||||||||||||||| ||||||||| |||||||||||||   |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42664228 ataatctatttagtttagtgtcaattataaataaatttgactttttaaaacttcatagagtacaacttttataaataattattgttagattttattttct 42664129  T
Q  119 ttactgtcgtttcattaaatataagtaaaaattat 153  Q
    |  ||||| ||||||| ||||||||||||||||||    
T  42664128 tcgctgtcatttcatttaatataagtaaaaattat 42664094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 33828280 - 33828417
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttagatt 109  Q
    ||||||| |||||||||||||||||||| |||||||| ||||||||||||||   |||||| | |||||| |||||||||||||||| ||||||||| ||    
T  33828280 aaaatattgataatctatttagtttagtgtcaattatggataaatttgacttctaaaaactccttagagctcaacttttataaataactattgttagctt 33828379  T
Q  110 ttattttctttactgtcgtttcattaaatataagtaaa 147  Q
    |||||||||||  ||  |||||||||||||| ||||||    
T  33828380 ttattttctttgttgcagtttcattaaatatgagtaaa 33828417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 16366877 - 16366771
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttagatt 109  Q
    ||||||| |||||||||||||||||||| | |||||||||||||||||| ||   |||||||| ||| || |||||||||||||||| ||||||||  ||    
T  16366877 aaaatattgataatctatttagtttagtgttaattatagataaatttgaattttaaaaacttcttagggctcaacttttataaataactattgttatctt 16366778  T
Q  110 ttatttt 116  Q
    |||||||    
T  16366777 ttatttt 16366771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 41877490 - 41877635
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattatagata--aatttgactt---aaaacttcatagagcacaacttttataaataattattgttaga 107  Q
    |||||||  ||||| ||||||||||| | |||| |||| |||  ||||||||||   ||||||| ||| | | |||||||||||||||||||||||||||    
T  41877490 aaaatattaataatttatttagtttaatgtcaagtatatatataaatttgacttcttaaaacttgataaaactcaacttttataaataattattgttaga 41877589  T
Q  108 ttttattttctttactgtcgtttcattaaatataagtaaaaattat 153  Q
    || || ||||||   |||||||||||||| ||||||||||||||||    
T  41877590 ttatagtttcttcgttgtcgtttcattaattataagtaaaaattat 41877635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 29191181 - 29191038
Alignment:
Q  14 aaatatagataatctatttagtttagtatcaattatagataaatttga---cttaaaacttcatagagcacaacttttataaataattattgttaga-tt 109  Q
    |||||| |||| | |||||||||| || |||||||| ||||||||| |   |||| ||||  ||| ||| |||||||||||| ||| |||||||  | ||    
T  29191181 aaatattgatagtatatttagtttggtgtcaattatggataaatttaagttcttacaactctataaagctcaacttttataactaactattgtttaactt 29191082  T
Q  110 ttattttctttactgtcgtttcattaaatataagtaaaaattat 153  Q
    ||||||||||   ||||| |||||||||||||||||||||||||    
T  29191081 ttattttcttcgttgtcggttcattaaatataagtaaaaattat 29191038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 10208035 - 10207934
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttagatt 109  Q
    ||||||| |||||| |||||||||| ||  ||||||||    ||||||||||   |||||||||||| ||  ||||||| ||||||||||||||||||||    
T  10208035 aaaatattgataatttatttagttttgtgccaattata----aatttgacttcttaaaacttcatagggcttaacttttttaaataattattgttagatt 10207940  T
Q  110 ttattt 115  Q
    ||||||    
T  10207939 ttattt 10207934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 25247041 - 25246942
Alignment:
Q  21 gataatctatttagtttagtatcaattatagataaatttg---acttaaaacttcatagagcacaacttttataaataattattgttagattttattttc 117  Q
    |||||| ||||||||||||| |||||||||||||||||||    ||||||||| |||||| | || |||||| ||||||  || ||||| ||||||||||    
T  25247041 gataatatatttagtttagtgtcaattatagataaatttgtcttcttaaaactccatagaactcatcttttacaaataa--atagttagcttttattttc 25246944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 36734666 - 36734726
Alignment:
Q  88 tataaataattattgttagattttattttctttactgtcgtttcattaaatataagtaaaa 148  Q
    ||||||||| ||| ||||| |||||||||||||  ||  |||||||||||||| |||||||    
T  36734666 tataaataactatcgttagcttttattttctttgttgcagtttcattaaatattagtaaaa 36734726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 44508305 - 44508162
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttagatt 109  Q
    ||||||| ||||||||||||| |||||| |||||||||||||||||||||||   ||||||| ||||||| ||||||||||||||||||||| | |||||    
T  44508305 aaaatattgataatctatttaatttagtgtcaattatagataaatttgacttcttaaaactttatagagctcaacttttataaataattattttcagatt 44508206  T
Q  110 ttattttctttactgtcgtttcattaaatataagtaaaaattat 153  Q
    ||| ||||||   |||||||||||||||||||||||||| ||||    
T  44508205 ttagtttcttcgttgtcgtttcattaaatataagtaaaatttat 44508162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 152
Target Start/End: Original strand, 41335963 - 41336089
Alignment:
Q  29 atttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttagattttattttctttactgt 125  Q
    |||||||||||| ||||||||| |||||||||| ||   |||| |||||||||  ||||||||||| |||||||||||||||||||||||||||   |||    
T  41335963 atttagtttagtgtcaattataaataaatttgatttgttaaaagttcatagagttcaacttttatacataattattgttagattttattttcttcgttgt 41336062  T
Q  126 cgtttcattaaatataagtaaaaatta 152  Q
     |||||||||||||||| |||||||||    
T  41336063 agtttcattaaatataactaaaaatta 41336089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 7093605 - 7093741
Alignment:
Q  21 gataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaac-ttttataaataattattgttagattttatttt 116  Q
    |||||||||||||||||||| |||||||| |||||||||| |||   |||||| || ||| |  | | ||||| |||||| ||||||| | |||||||||    
T  7093605 gataatctatttagtttagtgtcaattattgataaatttgtcttcttaaaactccaaagaacttatcattttacaaataactattgtttgcttttatttt 7093704  T
Q  117 ctttactgtcgtttcattaaatataagtaaaaattat 153  Q
    |||   |||||||||||||||||||||||||||||||    
T  7093705 cttcgttgtcgtttcattaaatataagtaaaaattat 7093741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 15962385 - 15962520
Alignment:
Q  22 ataatctatttagtttagtatcaattatagataaatttga---cttaaaacttcatagagcacaacttttataaataattattgttaga-ttttattttc 117  Q
    ||||| ||||||||||||| |||||||| |||| |||| |   |||| |||| |||| ||| |||| ||||||||||| ||| |||  | ||||||||||    
T  15962385 ataatatatttagtttagtgtcaattatggatacatttaagttcttacaactccataaagctcaacatttataaataactatggtttaacttttattttc 15962484  T
Q  118 tttactgtcgtttcattaaatataagtaaaaattat 153  Q
    ||   |||||||||||||||||||||||||||||||    
T  15962485 ttcgttgtcgtttcattaaatataagtaaaaattat 15962520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 31067161 - 31067033
Alignment:
Q  21 gataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttagattttattttc 117  Q
    ||||||| ||||| |||||| |||||||| ||||  ||||||||   |||||| | |||||| ||||||||| |||||||||||||||| ||||||||||    
T  31067161 gataatcaatttaatttagtgtcaattatggata--tttgacttctaaaaactccttagagctcaacttttaaaaataattattgttagtttttattttc 31067064  T
Q  118 tttactgtcgtttcattaaatataagtaaaa 148  Q
    |||   |  |||||||||||||| |||||||    
T  31067063 tttgtcgcagtttcattaaatatgagtaaaa 31067033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 29790650 - 29790784
Alignment:
Q  22 ataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttagattttattttct 118  Q
    |||||||||||||| |||| |||||||||  ||||||||||||   ||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  29790650 ataatctatttagtctagtgtcaattataagtaaatttgacttgttaaaacttcataaagtacaacttttataaataattattgttagattttattttct 29790749  T
Q  119 ttactgtcgtttcattaaatataagtaaaaattat 153  Q
    |  ||||| |||||||| |||||||||||||||||    
T  29790750 tcgctgtcatttcattacatataagtaaaaattat 29790784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 15471162 - 15471024
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattatagataaatttga---cttaaaacttcatagagcacaacttttataaataattattgttagatt 109  Q
    ||||||| |||||||||||||||||||| |||||||| |||||||||||   || ||||||   |||||| |||||||||||||||| || |||||  ||    
T  15471162 aaaatattgataatctatttagtttagtgtcaattatggataaatttgaattctaaaaactcattagagctcaacttttataaataactaatgttaactt 15471063  T
Q  110 ttattttctttactgtcgtttcattaaatataagtaaaa 148  Q
    || ||||||||  ||| |||||||||||||| |||||||    
T  15471062 ttcttttctttgttgtagtttcattaaatatgagtaaaa 15471024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 14144974 - 14144833
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaat---tatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttag 106  Q
    ||||||| |||||||||||||||||||| |||||   ||| |||||||||||| |   |||||| | ||||||  ||||||||||||||| |||||||||    
T  14144974 aaaatattgataatctatttagtttagtgtcaataattatggataaatttgacctctaaaaactccttagagcttaacttttataaataagtattgttag 14144875  T
Q  107 attttattttctttactgtcgtttcattaaatataagtaaaa 148  Q
     |||||||||||||  ||  |||||||||||||| |||||||    
T  14144874 cttttattttctttgttgcagtttcattaaatatgagtaaaa 14144833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 35952012 - 35951869
Alignment:
Q  14 aaatatagataatctatttagtttagtatcaattatagataaatttga---cttaaaacttcatagagcacaacttttataaataattattgttaga-tt 109  Q
    |||||| |||||| ||||||||||||| |||||||| ||||||||| |   |||| ||||  ||| ||| |||||||||||||||| |||||||  | ||    
T  35952012 aaatattgataatatatttagtttagtgtcaattatggataaattttagttcttacaactctataaagctcaacttttataaataactattgtttaactt 35951913  T
Q  110 ttattttctttactgtcgtttcattaaatataagtaaaaattat 153  Q
    ||||||||||   |||| ||||||||||||||||||||||||||    
T  35951912 ttattttcttcgttgtcatttcattaaatataagtaaaaattat 35951869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 33140382 - 33140249
Alignment:
Q  21 gataatctatttagtttagtatcaattatagataaatttga---cttaaaacttcatagagcacaacttttataaataattattgttaga-ttttatttt 116  Q
    |||||| ||||||||  ||| |||||||| ||||||||| |   |||| |||| |||| ||| ||| |||||||||||| |||||||  | |||||||||    
T  33140382 gataatatatttagt--agtgtcaattatggataaatttaagttcttacaactccataaagctcaaattttataaataactattgtttaacttttatttt 33140285  T
Q  117 ctttactgtcgtttcattaaatataagtaaaaatta 152  Q
    |||   ||||||||||||||||||||||||||||||    
T  33140284 cttcgttgtcgtttcattaaatataagtaaaaatta 33140249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 3707322 - 3707466
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattataga-taaatttgactt---aaaacttcatagagcacaacttttataaataattattgttagat 108  Q
    ||||||| |||||| || ||||| | || ||||||| | | ||||||||||||   |||||| | |||||| |||| | ||||||||| |||| |||  |    
T  3707322 aaaatattgataatataattagtatggtgtcaattaaatactaaatttgacttcataaaactccttagagctcaacatctataaataactattcttaact 3707421  T
Q  109 tttattttctttactgtcgtttcattaaatataagtaaaaattat 153  Q
    |||||||||||   ||| ||||||||||||||||||||| |||||    
T  3707422 tttattttcttcgttgttgtttcattaaatataagtaaacattat 3707466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 47668992 - 47668849
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattatagataaatttga---cttaaaacttcatagagcacaacttttataaataattattgttagatt 109  Q
    ||||||| ||||||||||||| |||||| ||||||||||||||||||||   |||||||||| ||||||  ||||||||||||||||| || ||||||||    
T  47668992 aaaatattgataatctatttaatttagtgtcaattatagataaatttgatttcttaaaactttatagagttcaacttttataaataatcatcgttagatt 47668893  T
Q  110 ttattttctttactgtcgtttcattaaatataagtaaaaattat 153  Q
    ||| |||||| | ||||||||||||||||||||| || ||||||    
T  47668892 ttagtttcttcattgtcgtttcattaaatataagcaataattat 47668849  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 55250518 - 55250661
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattatagataaatttga---cttaaaacttcatagagcacaacttttataaataattattgttagatt 109  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||   ||||||| || ||| ||| ||||||| |||||||||||||||||||||    
T  55250518 aaaatattgataatctatttagtttagtgtcaattatagataaatttgacttcttaaaattttatatagctcaactttaataaataattattgttagatt 55250617  T
Q  110 ttattttctttactgtcgtttcattaaatataagtaaaaattat 153  Q
    ||| ||||||   |||  ||||||||||||||||||||||||||    
T  55250618 ttagtttcttcgttgttatttcattaaatataagtaaaaattat 55250661  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 25 - 153
Target Start/End: Complemental strand, 20447840 - 20447709
Alignment:
Q  25 atctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttagattttattttcttta 121  Q
    |||||||||  ||||| ||||||| |||||||||||||||   | ||| ||||||||| |||||||||||||||||||||||||||||||| ||||||      
T  20447840 atctatttaagttagtgtcaattaaagataaatttgacttcttacaacatcatagagctcaacttttataaataattattgttagattttagtttcttcg 20447741  T
Q  122 ctgtcgtttcattaaatataagtaaaaattat 153  Q
     |||||||||||||||||||||||||||||||    
T  20447740 ttgtcgtttcattaaatataagtaaaaattat 20447709  T

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Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 35466492 - 35466626
Alignment:
Q  22 ataatctatttagtttagtatcaattatagataaatttgacttaa---aacttcatagagcacaacttttataaataattattgttagattttattttct 118  Q
    ||||||||||||||||||| ||||||| | |||||||||||||     ||||| |||||| ||||||||||| ||||||||||||| |||||||||||||    
T  35466492 ataatctatttagtttagtgtcaattagaaataaatttgacttgttttaactttatagagtacaacttttatgaataattattgttcgattttattttct 35466591  T
Q  119 ttactgtcgtttcattaaatataagtaaaaattat 153  Q
        | | |||||||||||||||||||||||||||    
T  35466592 acgttattgtttcattaaatataagtaaaaattat 35466626  T

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Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 1101163 - 1101032
Alignment:
Q  21 gataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttagattttattttc 117  Q
    |||||||||||||||||||| |||| |||||||||||||| |||   ||||||  ||||||| || |||||| |||||| ||||| ||| ||||||||||    
T  1101163 gataatctatttagtttagtgtcaactatagataaatttgtcttcttaaaactcaatagagctcatcttttacaaataactattggtagcttttattttc 1101064  T
Q  118 tttactgtcgtttcattaaatataagtaaaaa 149  Q
    ||   ||| |||||||||||||||||||||||    
T  1101063 ttagttgttgtttcattaaatataagtaaaaa 1101032  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 29857487 - 29857376
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttagatt 109  Q
    ||||||| |||||||||||||||||||| | |||||| |||||| |||||||   ||||||   || ||| |||||||||||| ||| ||||||||  ||    
T  29857487 aaaatattgataatctatttagtttagtgttaattatggataaaattgacttctaaaaactctttaaagctcaacttttataagtaactattgttaactt 29857388  T
Q  110 ttattttcttta 121  Q
    ||||||||||||    
T  29857387 ttattttcttta 29857376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 46964031 - 46964134
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttagatt 109  Q
    ||||||| |||||| ||||||||  |||  ||||||| ||||||||||||||   |||||| ||| |||| ||||||||||||| ||||||| || | ||    
T  46964031 aaaatattgataatttatttagtagagt--caattatggataaatttgacttcttaaaactccatcgagctcaacttttataaaaaattattttttgttt 46964128  T
Q  110 ttattt 115  Q
    ||||||    
T  46964129 ttattt 46964134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 1838867 - 1838934
Alignment:
Q  87 ttataaataattattg-ttagattttattttctttactgtcgtttcattaaatataagtaaaaattat 153  Q
    |||||||||| ||||| |||| |||||| ||||||  || ||||||||| ||||||||||||||||||    
T  1838867 ttataaataactattggttagcttttatgttctttgttgccgtttcattcaatataagtaaaaattat 1838934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 152
Target Start/End: Original strand, 20921404 - 20921534
Alignment:
Q  24 aatctatttagtttagtatcaattatagataaatttgactt--aaaacttcatagagcacaacttttataaataattattgttagattttattttcttta 121  Q
    ||||||||||||||||| ||||||||| |||||||||| ||  |||| |||||||||  |||||| |||| |||||  ||||||||||||||||||||      
T  20921404 aatctatttagtttagtgtcaattataaataaatttgatttttaaaaattcatagagttcaacttctatacataatatttgttagattttattttcttcg 20921503  T
Q  122 ctgtcgtttcattaaatataagtaaaaatta 152  Q
     ||| |||||||||||||||| |||||||||    
T  20921504 ttgtagtttcattaaatataactaaaaatta 20921534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 20902845 - 20902934
Alignment:
Q  63 ttaaaacttcatagagcacaacttttataaataattattgttagattttattttctttactgtcgtttcattaaatataagtaaaaatta 152  Q
    ||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||    || |||||||||||||||| |||||||||    
T  20902845 ttaaaacttcatagagttcaacttttatacataattattgttagattttattttcttcgtggtagtttcattaaatataactaaaaatta 20902934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 151
Target Start/End: Original strand, 4017129 - 4017259
Alignment:
Q  23 taatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttagattttattttctt 119  Q
    |||||||||||||||||| | ||||||  |||||||||||||   ||||||  ||||| | |||||||||||||||||| || ||||||||| |||| ||    
T  4017129 taatctatttagtttagtgttaattatgaataaatttgacttctgaaaactcgatagaactcaacttttataaataattttttttagatttt-ttttttt 4017227  T
Q  120 tactgtcgtttcattaaatataagtaaaaatt 151  Q
    |  ||  |||||||||||||||||||||||||    
T  4017228 tgttgcagtttcattaaatataagtaaaaatt 4017259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 270311 - 270439
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttagatt 109  Q
    ||||||| ||||||||| |||||||||| ||||||||| |||||||||||||   |||||| | |||||| |||||||||||||||| |||| |||| ||    
T  270311 aaaatattgataatctacttagtttagtgtcaattataaataaatttgacttttaaaaactccttagagctcaacttttataaataactatttttagctt 270410  T
Q  110 ttattttctttactgtcgtttcattaaat 138  Q
    |||||||||||  ||  ||||||||||||    
T  270411 ttattttctttgttgcagtttcattaaat 270439  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 34821122 - 34821051
Alignment:
Q  82 aacttttataaataattattgttagattttattttctttactgtcgtttcattaaatataagtaaaaattat 153  Q
    ||||||||||||||||||| ||||||||||| |||||| | |||| |||||  |||||||||||||||||||    
T  34821122 aacttttataaataattatagttagattttagtttcttcattgtcatttcacaaaatataagtaaaaattat 34821051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 19910173 - 19910308
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttagatt 109  Q
    ||||||| |||||||||||| ||||||| |   |||| ||||||||||||||   |||||  | ||||||||||||||||||||||| |||||||||  |    
T  19910173 aaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaaaacaccttagagcacaacttttataaataactattgttagcgt 19910269  T
Q  110 ttattttctttactgtcgtttcattaaatataagtaaaa 148  Q
    ||||||| |||  ||  |||||||||| ||| |||||||    
T  19910270 ttattttttttgttgcagtttcattaattatgagtaaaa 19910308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 47235954 - 47236053
Alignment:
Q  21 gataatctatttagtttagtatcaattatagataaatttg---acttaaaacttcatagagcacaacttttataaataattattgttagattttattttc 117  Q
    |||||||||||||||||||| |||||||||||||||||||    ||||||||| |||||| | || |||||| ||||||  || ||||| ||||||||||    
T  47235954 gataatctatttagtttagtgtcaattatagataaatttgtcttcttaaaactccatagaactcatcttttacaaataa--atagttagcttttattttc 47236051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 27705431 - 27705380
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattatagataaatttgactt 64  Q
    ||||||| |||||||||||||| || ||||||||||| ||||||||| ||||    
T  27705431 aaaatattgataatctatttagcttggtatcaattatggataaatttaactt 27705380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 16542 - 16434
Alignment:
Q  13 aaaatatagataatctatttagtttagtatcaattatagataaatttgact--taaaacttcatagagcacaacttttataaataattattgttagattt 110  Q
    ||||||| |||||| |||||||||||||||||||| | ||||||| |||||  | ||| |||||| | | ||||||||||| |||| |||| |||| |||    
T  16542 aaaatattgataatttatttagtttagtatcaattgtggataaatctgacttcttaaaattcatacatctcaacttttatagataactattattagcttt 16443  T
Q  111 tattttctt 119  Q
    |||||||||    
T  16442 tattttctt 16434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 12728 - 12597
Alignment:
Q  21 gataatctatttagtttagtatcaattatagataaatttgactt---aaaacttcatagagcacaacttttataaataattattgttagattttattttc 117  Q
    |||| ||||||||||||||| |||| ||| |||||||||| |||   |||||| |||||||| ||  ||||| |||||| ||  ||||  |||| |||||    
T  12728 gatattctatttagtttagtgtcaagtatggataaatttgtcttcttaaaactccatagagctcattttttacaaataactaccgttaacttttcttttc 12629  T
Q  118 tttactgtcgtttcattaaatataagtaaaaa 149  Q
    ||   ||| |||||||||||||||||||||||    
T  12628 ttagttgttgtttcattaaatataagtaaaaa 12597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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