View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5688_low_2 (Length: 472)

Name: NF5688_low_2
Description: NF5688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5688_low_2
NF5688_low_2
[»] chr5 (6 HSPs)
chr5 (1-454)||(37512009-37512463)
chr5 (378-454)||(31788629-31788705)
chr5 (379-453)||(40544240-40544314)
chr5 (378-454)||(32031969-32032045)
chr5 (329-438)||(32642039-32642149)
chr5 (378-454)||(40548372-40548448)
[»] chr6 (6 HSPs)
chr6 (379-454)||(29123235-29123310)
chr6 (379-454)||(32745754-32745829)
chr6 (381-454)||(29152977-29153050)
chr6 (379-451)||(29149763-29149835)
chr6 (366-449)||(29011988-29012071)
chr6 (379-427)||(23216867-23216915)
[»] chr4 (4 HSPs)
chr4 (379-450)||(54295953-54296024)
chr4 (380-453)||(37894946-37895019)
chr4 (346-453)||(9573461-9573568)
chr4 (400-454)||(9603475-9603529)
[»] chr1 (1 HSPs)
chr1 (383-445)||(367931-367993)


Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 37512463 - 37512009
Alignment:
Q  1 caggggtgcgatatggagttttataaccaaaagggttgcgaggaatgaccttgatttcctcaatagttgggttgcataataaaactcttccataattttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37512463 caggggtgcgatatggagttttataaccaaaagggttgcgaggaatgaccttgatttcctcaatagttaggttgcataataaaactcttccataattttt 37512364  T
Q  101 acgagaatctttatatagagagatagaacatcattaatactagcaggaccaaaaatgtaaaaaccaggatgagggtcatcctcattgaatggatttggcc 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37512363 acgagaatctttatatagagacatagaacatcattaatactagcaggaccaaaaatgtaaaaaccaggatgagggtcatcctcattgaatggatttggcc 37512264  T
Q  201 attccaatttgaccttcttctcaaatctctcacccgaaatggaatacaacataaaattaaatggatgattaacatcatacgacataacattaggagagat 300  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37512263 atttcaatttgaccttcttctcaaatctctcacccgacatggaatacaacataaaattaaatggatgattaacatcatacgacataacattaggagagat 37512164  T
Q  301 gtttcgtcataacaagaattcttattaaataagaaattgttgctg-acatgctcataaattgagggttttcaagcaattgagaccatgatttgcgtacat 399  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37512163 gtttcatcataacaagaattcttattaaataagaaattgttgctgaacatgctcataaattgagggttttcaagcaattgagaccatgatttgcatacat 37512064  T
Q  400 attcaaatcgtttcaaagatttgagaggcagttttgataaaatggagaaggcaat 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37512063 attcaaatcgtttcaaagatttgagaggcagttttgataaaatggagaaggcaat 37512009  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 454
Target Start/End: Complemental strand, 31788705 - 31788629
Alignment:
Q  378 tgagaccatgatttgcgtacatattcaaatcgtttcaaagatttgagaggcagttttgataaaatggagaaggcaat 454  Q
    ||||||||||||||||||||  |||||||||||||||||||||| |  || |||||||||| ||| |||||||||||    
T  31788705 tgagaccatgatttgcgtacgcattcaaatcgtttcaaagatttaatggggagttttgatagaatagagaaggcaat 31788629  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 379 - 453
Target Start/End: Complemental strand, 40544314 - 40544240
Alignment:
Q  379 gagaccatgatttgcgtacatattcaaatcgtttcaaagatttgagaggcagttttgataaaatggagaaggcaa 453  Q
    ||||||||||||| | |||  |||||||||||||||||||||| | ||| |||||||||| ||| ||||||||||    
T  40544314 gagaccatgattttcttacgcattcaaatcgtttcaaagatttaatagggagttttgatagaatagagaaggcaa 40544240  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 454
Target Start/End: Complemental strand, 32032045 - 32031969
Alignment:
Q  378 tgagaccatgatttgcgtacatattcaaatcgtttcaaagatttgagaggcagttttgataaaatggagaaggcaat 454  Q
    ||||||||| ||||||||||  |||||||||||||||||||||| |  || |||||| ||| ||| |||||||||||    
T  32032045 tgagaccataatttgcgtacgcattcaaatcgtttcaaagatttaatggggagttttaatagaatagagaaggcaat 32031969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 438
Target Start/End: Complemental strand, 32642149 - 32642039
Alignment:
Q  329 ataagaaattgttgctgac-atgctcataaattgagggttttcaagcaattgagaccatgatttgcgtacatattcaaatcgtttcaaagatttgagagg 427  Q
    ||||||||||||| ||||| ||| |||| ||  |||| ||||||| |||    ||||||||||| ||||||||||||||| | | ||||||||| |||||    
T  32642149 ataagaaattgttactgaccatgttcatgaaaagaggattttcaaacaaaaatgaccatgatttacgtacatattcaaattgctacaaagatttaagagg 32642050  T
Q  428 cagttttgata 438  Q
     | ||||||||    
T  32642049 taattttgata 32642039  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 454
Target Start/End: Complemental strand, 40548448 - 40548372
Alignment:
Q  378 tgagaccatgatttgcgtacatattcaaatcgtttcaaagatttgagaggcagttttgataaaatggagaaggcaat 454  Q
    |||||||||||||| | ||   |||||||||| ||||||||||| | ||| |||||| ||| |||||| ||||||||    
T  40548448 tgagaccatgatttacttatgcattcaaatcgcttcaaagatttaacaggaagtttttatagaatggaaaaggcaat 40548372  T

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Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 379 - 454
Target Start/End: Complemental strand, 29123310 - 29123235
Alignment:
Q  379 gagaccatgatttgcgtacatattcaaatcgtttcaaagatttgagaggcagttttgataaaatggagaaggcaat 454  Q
    |||||||||||||||| ||  |||||| |||||| |||||||| ||||||| |||||||| |||||||||||||||    
T  29123310 gagaccatgatttgcgaacggattcaactcgtttaaaagatttaagaggcaattttgatagaatggagaaggcaat 29123235  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 379 - 454
Target Start/End: Original strand, 32745754 - 32745829
Alignment:
Q  379 gagaccatgatttgcgtacatattcaaatcgtttcaaagatttgagaggcagttttgataaaatggagaaggcaat 454  Q
    |||||||||||||||| ||  ||||||||||||| |||||||| ||||| ||||||||||  ||||||||||||||    
T  32745754 gagaccatgatttgcgaacgcattcaaatcgtttaaaagatttaagaggtagttttgataggatggagaaggcaat 32745829  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 454
Target Start/End: Original strand, 29152977 - 29153050
Alignment:
Q  381 gaccatgatttgcgtacatattcaaatcgtttcaaagatttgagaggcagttttgataaaatggagaaggcaat 454  Q
    |||||||||||||| ||| |||||||  | || |||||||| ||||||| |||||| | |||||||||||||||    
T  29152977 gaccatgatttgcgaacacattcaaaatgcttgaaagatttaagaggcaattttgagagaatggagaaggcaat 29153050  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 451
Target Start/End: Original strand, 29149763 - 29149835
Alignment:
Q  379 gagaccatgatttgcgtacatattcaaatcgtttcaaagatttgagaggcagttttgataaaatggagaaggc 451  Q
    |||||||||||||||| ||  |||||||||  || |||||||| ||||||| |||||| | ||||||||||||    
T  29149763 gagaccatgatttgcgaacgcattcaaatcagttaaaagatttaagaggcaattttgagagaatggagaaggc 29149835  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 29012071 - 29011988
Alignment:
Q  366 ttttcaagcaattgagaccatgatttgcgtacatattcaaatcgtttcaaagatttgagaggcagttttgataaaatggagaag 449  Q
    ||||||| |||  |||||||||||||||| ||| |||| ||||||||||| ||||  | ||| |||||||||| ||| ||||||    
T  29012071 ttttcaaacaagagagaccatgatttgcgaacagattcgaatcgtttcaacgattgcaaaggaagttttgatagaatagagaag 29011988  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 427
Target Start/End: Original strand, 23216867 - 23216915
Alignment:
Q  379 gagaccatgatttgcgtacatattcaaatcgtttcaaagatttgagagg 427  Q
    |||||||||||||||| ||| |||||||||  ||||||||||| |||||    
T  23216867 gagaccatgatttgcgaacacattcaaatctcttcaaagatttaagagg 23216915  T

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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 379 - 450
Target Start/End: Original strand, 54295953 - 54296024
Alignment:
Q  379 gagaccatgatttgcgtacatattcaaatcgtttcaaagatttgagaggcagttttgataaaatggagaagg 450  Q
    ||||||||||| | || ||  ||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  54295953 gagaccatgatctacgaacgcattcaaatcgtttaaaagatttaagaggcagttttgataaaatggagaagg 54296024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 453
Target Start/End: Complemental strand, 37895019 - 37894946
Alignment:
Q  380 agaccatgatttgcgtacatattcaaatcgtttcaaagatttgagaggcagttttgataaaatggagaaggcaa 453  Q
    ||||||||||| | | ||| |||||||||| ||||||||||||||||| ||||| |||| ||||||||||||||    
T  37895019 agaccatgattagtgaacacattcaaatcgcttcaaagatttgagagggagtttggatagaatggagaaggcaa 37894946  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 453
Target Start/End: Complemental strand, 9573568 - 9573461
Alignment:
Q  346 acatgctcataaattgagggttttcaagcaattgagaccatgatttgcgtacatattcaaatcgtttcaaagatttgagaggcagttttgataaaatgga 445  Q
    ||||| || |||| ||| |||||||||  ||  |||||||||||||||| ||| |||||||||| || |||||||| | ||||| ||| |||| ||||||    
T  9573568 acatgttcttaaagtgatggttttcaattaacagagaccatgatttgcgaacacattcaaatcgcttaaaagatttaataggcaatttggatagaatgga 9573469  T
Q  446 gaaggcaa 453  Q
    ||||||||    
T  9573468 gaaggcaa 9573461  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 454
Target Start/End: Original strand, 9603475 - 9603529
Alignment:
Q  400 attcaaatcgtttcaaagatttgagaggcagttttgataaaatggagaaggcaat 454  Q
    |||||||||| || |||||||| ||||||| ||| |||| |||||||||||||||    
T  9603475 attcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaat 9603529  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 445
Target Start/End: Complemental strand, 367993 - 367931
Alignment:
Q  383 ccatgatttgcgtacatattcaaatcgtttcaaagatttgagaggcagttttgataaaatgga 445  Q
    |||||||||||||||| ||| ||||||  |||||||||| |||||||||||||| | ||||||    
T  367993 ccatgatttgcgtacacatttaaatcgagtcaaagattttagaggcagttttgacataatgga 367931  T

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