View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5688_low_5 (Length: 336)

Name: NF5688_low_5
Description: NF5688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5688_low_5
NF5688_low_5
[»] chr2 (3 HSPs)
chr2 (1-336)||(13448261-13448596)
chr2 (4-336)||(13454735-13455067)
chr2 (4-336)||(13440101-13440433)
[»] chr7 (1 HSPs)
chr7 (4-336)||(3417473-3417805)
[»] chr5 (2 HSPs)
chr5 (4-336)||(12540586-12540918)
chr5 (4-336)||(28385235-28385567)
[»] chr4 (5 HSPs)
chr4 (33-336)||(48958074-48958380)
chr4 (33-329)||(48965259-48965555)
chr4 (33-332)||(48961221-48961525)
chr4 (88-305)||(48912319-48912539)
chr4 (88-336)||(48974103-48974342)
[»] scaffold0536 (3 HSPs)
scaffold0536 (91-336)||(6454-6702)
scaffold0536 (88-336)||(10436-10687)
scaffold0536 (97-155)||(1580-1638)
[»] chr8 (1 HSPs)
chr8 (79-336)||(12641424-12641684)
[»] chr6 (2 HSPs)
chr6 (33-332)||(12483411-12483716)
chr6 (118-258)||(12590196-12590336)


Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 13448261 - 13448596
Alignment:
Q  1 actaacttctttctctccgcaacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaattgtgttataagtttctcattgtaga 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13448261 actaacttctttctctccgcgacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaattgtgttatcagtttctcattgtaga 13448360  T
Q  101 attgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgc 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448361 attgatctccatgaaccggccacgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgc 13448460  T
Q  201 agggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaaatcccttcggtaaccacttttct 300  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448461 agggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaaatcccttcggtaaccacttttct 13448560  T
Q  301 ttctctgctttgctctcatcttctttccctttcttc 336  Q
    |||||| ||| |||||||||||||||||||||||||    
T  13448561 ttctcttcttcgctctcatcttctttccctttcttc 13448596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 4 - 336
Target Start/End: Original strand, 13454735 - 13455067
Alignment:
Q  4 aacttctttctctccgcaacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaattgtgttataagtttctcattgtagaatt 103  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| | ||||||||| |||||||| ||||||||||    
T  13454735 aacttctctctctccgcaacaccacttgtacaccattctgttgcaccgacttcaattccaattcctcgaacttgtgttattagtttctcgttgtagaatt 13454834  T
Q  104 gatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgcagg 203  Q
    |||||||||| || ||||| ||||||||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13454835 gatctccatggactggccacgttatcattggaactcccatgctaacagcctctacgattgagttccccccgcaatgcgtcataaatccccccactgcagg 13454934  T
Q  204 gtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaaatcccttcggtaaccacttttctttc 303  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||| |||||||||| ||||    
T  13454935 gtgactcaatatcttaacttgtggggcccaacccctaatgatcaaaccctttttctcgatgtttttctcttcaaatcccttcggcaaccacttttgtttc 13455034  T
Q  304 tctgctttgctctcatcttctttccctttcttc 336  Q
    ||  ||| |||||||||||||||||||||||||    
T  13455035 tcctcttcgctctcatcttctttccctttcttc 13455067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 4 - 336
Target Start/End: Original strand, 13440101 - 13440433
Alignment:
Q  4 aacttctttctctccgcaacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaattgtgttataagtttctcattgtagaatt 103  Q
    ||||||| |||||||||||||||| || |||||||||| |||||||||||||| |||||||||||||| ||||||||||  |||||||| ||||||||||    
T  13440101 aacttctctctctccgcaacaccattcttacaccattccgttgcaccgacttccactccaattcctcgaaattgtgttaccagtttctcgttgtagaatt 13440200  T
Q  104 gatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgcagg 203  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||| |||||    
T  13440201 gatctccatgaaccggccacgttatcattggaactcccgcactaacagactctacaattgagttccccccgcaatgcgtcataaatccccccaccgcagg 13440300  T
Q  204 gtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaaatcccttcggtaaccacttttctttc 303  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| || |||  || ||||||||||| |||||||| || |||||||||||||||    
T  13440301 gtggctcaatatcttaacttgtggggcccaacccttaatgatcaaacccatcctcctaatgtttctctcttcgaatccctttggcaaccacttttctttc 13440400  T
Q  304 tctgctttgctctcatcttctttccctttcttc 336  Q
    ||| | |  ||||||||||||||||||||||||    
T  13440401 tcttcctcactctcatcttctttccctttcttc 13440433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 4 - 336
Target Start/End: Complemental strand, 3417805 - 3417473
Alignment:
Q  4 aacttctttctctccgcaacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaattgtgttataagtttctcattgtagaatt 103  Q
    ||||||||||||||| ||| ||||   | || ||||||||||||||| ||||| |||||||||||||||| ||||||||| |||||||||||| | ||||    
T  3417805 aacttctttctctccccaataccatgtgcacgccattctgttgcacctacttccactccaattcctcggacttgtgttattagtttctcattgaacaatt 3417706  T
Q  104 gatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgcagg 203  Q
    ||||||||||| ||||||| ||||||||||||||||| |||| ||||||||| ||   |||||||||||| ||||| |||||||||||||| || |||||    
T  3417705 gatctccatgacccggccacgttatcattggaactcctgcaccaacagcctcaacaaatgagttccccccacaatgtgtcataaatccccctaccgcagg 3417606  T
Q  204 gtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaaatcccttcggtaaccacttttctttc 303  Q
    |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| || || |||||||| |||||||||||||| |||||||||||||||    
T  3417605 gtggctcaatatctgaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcggcaaccacttttctttc 3417506  T
Q  304 tctgctttgctctcatcttctttccctttcttc 336  Q
    ||| ||| | ||||||||||||| |||||||||    
T  3417505 tcttcttcgttctcatcttcttttcctttcttc 3417473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 4 - 336
Target Start/End: Original strand, 12540586 - 12540918
Alignment:
Q  4 aacttctttctctccgcaacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaattgtgttataagtttctcattgtagaatt 103  Q
    ||||||||||||||| ||  |||| | |||||||||||||||||||| ||||| ||||||||||||||||  |||||||| |||||||| ||| | || |    
T  12540586 aacttctttctctccccattaccatttgtacaccattctgttgcacctacttctactccaattcctcggacctgtgttattagtttctcgttgaataagt 12540685  T
Q  104 gatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgcagg 203  Q
    |||||||||||  |||||| |||||||||||||||||||||| ||||||||||||  ||||||| ||||| ||||| ||||||||||||||||| |||||    
T  12540686 gatctccatgacacggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagg 12540785  T
Q  204 gtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaaatcccttcggtaaccacttttctttc 303  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| || || || |||||||| |||||||||||||| | |||||||||||||    
T  12540786 gtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttttttccaatgtttctctcctcaaatcccttcggcatccacttttctttc 12540885  T
Q  304 tctgctttgctctcatcttctttccctttcttc 336  Q
    ||| |||   ||||||||||||||||| |||||    
T  12540886 tcttcttcagtctcatcttctttccctctcttc 12540918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 4 - 336
Target Start/End: Original strand, 28385235 - 28385567
Alignment:
Q  4 aacttctttctctccgcaacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaattgtgttataagtttctcattgtagaatt 103  Q
    ||||||||||||||| ||  |||| | ||||||||||| ||| |||| ||||| |||||||||| ||||| |  |||||| | ||||||||||  ||| |    
T  28385235 aacttctttctctccccattaccatttgtacaccattccgttacacctacttccactccaattcttcggactgttgttatcaatttctcattgctgaagt 28385334  T
Q  104 gatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgcagg 203  Q
    ||||| |||||   ||||| |||||||||||||||||||| | ||||||||||||  |||||||||| |||||||| |||| |||||||||||| |||||    
T  28385335 gatctgcatgacaaggccacgttatcattggaactcccgcgccaacagcctctacaattgagttccctccgcaatgtgtcagaaatccccccaccgcagg 28385434  T
Q  204 gtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaaatcccttcggtaaccacttttctttc 303  Q
    || ||||||||||  ||||||||||||||||||||| || || ||||||||||| || || |||||||| ||||||||||| || | |||||||||||||    
T  28385435 gttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcctcaaatccctttggcagccacttttctttc 28385534  T
Q  304 tctgctttgctctcatcttctttccctttcttc 336  Q
    ||| ||| | |||||||||||||||||||||||    
T  28385535 tcttcttcgatctcatcttctttccctttcttc 28385567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 8e-55; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 33 - 336
Target Start/End: Original strand, 48958074 - 48958380
Alignment:
Q  33 acaccattctgttgcaccgacttcaactccaattcctcggaattgtgttataagtttctcattgtagaattgatctccatgaaccggccatgttatcatt 132  Q
    |||||| ||||||||||| || || || ||||||||||| |  |  ||||| |  ||||||||||||||||| |||||||| |||||||| || ||||||    
T  48958074 acaccactctgttgcaccaacctccaccccaattcctcgcacattagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcatt 48958173  T
Q  133 ggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggccc 232  Q
    ||||| ||||| ||||||||||| || || ||||||| ||||||||| ||||||||| | ||||| |||  ||||||||  |||  ||||||||||||||    
T  48958174 ggaacccccgcgctaacagcctccacagtggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggccc 48958273  T
Q  233 aacccctaatgatcaaacc---cttcttcccgatatttctctcttcaaatcccttcggtaaccacttttctttctctgctttgctctcatcttctttccc 329  Q
    | |||||||||||||||||   |||||| || || ||||||||||| ||||| ||||| ||||||||| |||||||  |||  ||||| |||||||||||    
T  48958274 accccctaatgatcaaacctttcttctttccaatgtttctctcttcgaatcctttcggcaaccactttcctttctcctcttcactctcgtcttctttccc 48958373  T
Q  330 tttcttc 336  Q
    |||||||    
T  48958374 tttcttc 48958380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 33 - 329
Target Start/End: Original strand, 48965259 - 48965555
Alignment:
Q  33 acaccattctgttgcaccgacttcaactccaattcctcggaattgtgttataagtttctcattgtagaattgatctccatgaaccggccatgttatcatt 132  Q
    |||||||||||||||||| ||||| |||||||| ||||| | || |||||| ||||| || ||||||||||| ||||||||    |||||||| |||||     
T  48965259 acaccattctgttgcaccaacttccactccaatccctcgcacttctgttatcagtttttcgttgtagaattgttctccatgtgaaggccatgtaatcatc 48965358  T
Q  133 ggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggccc 232  Q
    ||||| ||||||| ||||||||| || || |||||||  || ||||| ||||||||  | ||||| || ||||||||||  |||  ||| || || ||||    
T  48965359 ggaacccccgcaccaacagcctccactgtggagttccaaccacaatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagccc 48965458  T
Q  233 aacccctaatgatcaaacccttcttcccgatatttctctcttcaaatcccttcggtaaccacttttctttctctgctttgctctcatcttctttccc 329  Q
    |||||||||| |||||||||||||| || || ||||||||||| |||||||| |||||||||||||  |||||  |||  |||||||| ||||||||    
T  48965459 aacccctaataatcaaacccttctttccaatgtttctctcttcgaatccctttggtaaccacttttgcttctcctcttcactctcatcctctttccc 48965555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 33 - 332
Target Start/End: Original strand, 48961221 - 48961525
Alignment:
Q  33 acaccattctgttgcaccgacttcaactccaattcctcggaattgtgttataagtttctcattgtagaattgatctccatgaaccggccatgttatcatt 132  Q
    |||||||||||||||||| ||||||| |||||| || || |  |  ||||| |  ||||| ||||||||||| |||||||| || |||||||||||||||    
T  48961221 acaccattctgttgcaccaacttcaattccaataccccgcacatcagttatcaacttctcgttgtagaattgttctccatgtacgggccatgttatcatt 48961320  T
Q  133 ggaactcccgcactaacagcctctacggttgag--ttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggc 230  Q
    || |  || |||||| ||||||| | ||| |||  |||| ||||||||||||||||||  | ||||| || | ||||| ||  ||| |||||||||||||    
T  48961321 gggatccctgcactaccagcctcaatggtggagagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggc 48961420  T
Q  231 ccaacccctaatgatcaaacccttcttcc---cgatatttctctcttcaaatcccttcggtaaccacttttctttctctgctttgctctcatcttctttc 327  Q
    ||| ||| ||||||||||||||||||||    | || ||||||||||||||||| ||||| |||||||| ||||||||  ||| |||||||||  |||||    
T  48961421 ccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcggcaaccacttgtctttctcctcttcgctctcatccactttc 48961520  T
Q  328 ccttt 332  Q
    |||||    
T  48961521 ccttt 48961525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 305
Target Start/End: Complemental strand, 48912539 - 48912319
Alignment:
Q  88 ttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataa 187  Q
    ||||||||||| || || |||||||| | |||||| || ||||||||||| || |||||||| ||||| || || || |||| ||| ||||| |||||||    
T  48912539 ttctcattgtaaaactgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatgtgtcataa 48912440  T
Q  188 atccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttc---ccgatatttctctcttcaaatccctt 284  Q
    || | ||||| || | ||||||||  ||| |||| ||||| ||||||||| |||| |||| | ||||||||   |||||| ||||||||||||| |||||    
T  48912439 atgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctt 48912340  T
Q  285 cggtaaccacttttctttctc 305  Q
     || ||||| |||||||||||    
T  48912339 tggcaaccatttttctttctc 48912319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 336
Target Start/End: Original strand, 48974103 - 48974342
Alignment:
Q  88 ttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataa 187  Q
    ||||| ||||||||||| ||  |||| || ||||| || ||||||||||| || |||||||| || || ||||| ||||||| ||||||||| ||||  |    
T  48974103 ttctcgttgtagaattgttcgtcatgcactggccacgtgatcattggaacccctgcactaacggcttccacggtggagttccacccgcaatgtgtcaaga 48974202  T
Q  188 atccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaaatcccttcgg 287  Q
    || | || |  ||||||||||  || |||   |||||||||||||| ||||| |||||||         |||| ||||| ||||||||||||||||| ||    
T  48974203 atgcaccgatagcagggtggcctaaaatcaccacttgtggggcccacccccttatgatca---------tcccaatattcctctcttcaaatccctttgg 48974293  T
Q  288 taaccacttttctttctctgctttgctctcatcttctttccctttcttc 336  Q
     | ||||||||| |||||  | ||||||||||| |||||||||||||||    
T  48974294 catccacttttcgttctcgtcattgctctcatcctctttccctttcttc 48974342  T

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Target: scaffold0536 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 91 - 336
Target Start/End: Complemental strand, 6702 - 6454
Alignment:
Q  91 tcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatc 190  Q
    |||||||| ||||| |||||||| |||||||| || ||||| ||||| || |||||||||||||| || || || |||| ||| ||||||||||||||      
T  6702 tcattgtaaaattgttctccatgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacg 6603  T
Q  191 cccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttc---ccgatatttctctcttcaaatcccttcgg 287  Q
    | ||||  ||   ||||||||| ||| |||||||||| |||||||||||||| |||||||||||||||   ||||||||||||||||| |||||||| ||    
T  6602 cacccagagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttgg 6503  T
Q  288 taaccacttttctttctctgctttgctctcatcttctttccctttcttc 336  Q
     ||||| ||| |||||||  |||  ||||||||||||||||||||||||    
T  6502 caaccattttcctttctcctcttcactctcatcttctttccctttcttc 6454  T

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Target: scaffold0536; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 88 - 336
Target Start/End: Complemental strand, 10687 - 10436
Alignment:
Q  88 ttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataa 187  Q
    ||||||||||| ||||| |||||||| |  ||||| || ||||||||||| || |||||||| ||||| ||||| || |||| ||| ||||| |||||||    
T  10687 ttctcattgtaaaattgttctccatgcattggccacgtgatcattggaacccctgcactaaccgcctccacggtggaattccacccacaatgtgtcataa 10588  T
Q  188 atccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttc---ccgatatttctctcttcaaatccctt 284  Q
    |  | |||||  ||| |||||| |  ||| |||| || |||||||||||| |||| |||||||||||||||    | |||  ||| ||||||||||| ||    
T  10587 acgcacccacaacagtgtggcttagaatcataacctgaggggcccaacccttaataatcaaacccttcttctttgcaataactctttcttcaaatccttt 10488  T
Q  285 cggtaaccacttttctttctctgctttgctctcatcttctttccctttcttc 336  Q
    ||||| ||| |||||||||||  |||  |||||||  |||||||||||||||    
T  10487 cggtagccatttttctttctcctcttgactctcattctctttccctttcttc 10436  T

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Target: scaffold0536; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 1638 - 1580
Alignment:
Q  97 tagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctc 155  Q
    ||||||||||| | ||| || |||||||| |||||||||| ||| ||||||||||||||    
T  1638 tagaattgatcactatgtactggccatgtgatcattggaattcctgcactaacagcctc 1580  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 79 - 336
Target Start/End: Complemental strand, 12641684 - 12641424
Alignment:
Q  79 gttataagtttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaat 178  Q
    ||||| || |||||||| ||||| || ||||| || || ||||| || ||||||||||  || |||||||||||||||||    ||||||  ||||||||    
T  12641684 gttatcagcttctcattatagaactgttctccttgcactggccacgtgatcattggaatccctgcactaacagcctctaccaaggagttcgacccgcaat 12641585  T
Q  179 gcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacc---cttcttcccgatatttctctcttc 275  Q
    ||||||| ||| | ||||| |||| |||||| || ||| | ||||||||||||||  |||||||||| |||||   ||| ||  | | ||||||||||||    
T  12641584 gcgtcatgaatgcacccacagcagcgtggcttaaaatcattacttgtggggcccactccctaatgataaaacctttcttattttcaacatttctctcttc 12641485  T
Q  276 aaatcccttcggtaaccacttttctttctctgctttgctctcatcttctttccctttcttc 336  Q
     ||||| || || |||||||||||||||||  |||  |||||||||| |||||||||||||    
T  12641484 gaatcctttaggcaaccacttttctttctcctcttcactctcatcttttttccctttcttc 12641424  T

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Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 33 - 332
Target Start/End: Complemental strand, 12483716 - 12483411
Alignment:
Q  33 acaccattctgttgcaccgacttcaactccaattcctcggaattgtgttataagtttctcattgtagaattgatctccatgaaccggccatgttatcatt 132  Q
    |||||| ||||||||||||||||| || ||||| ||||| |  |  ||||| |||||||||||||| || || || || ||||||||||| || ||||||    
T  12483716 acaccactctgttgcaccgacttccacaccaatccctcgcacattagttatgagtttctcattgtaaaaatgttcaccgtgaaccggccacgtgatcatt 12483617  T
Q  133 ggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggccc 232  Q
    ||||  || |||||||| || || ||    || ||||  || || || ||||||||| | |||||||||||||||||||| |||   || ||||| ||||    
T  12483616 ggaatccctgcactaaccgcttccacaacagaattccatccacagtgagtcataaatgcacccactgcagggtggctcaaaatcagtacctgtggtgccc 12483517  T
Q  233 aacccctaatgatcaaacccttcttc------ccgatatttctctcttcaaatcccttcggtaaccacttttctttctctgctttgctctcatcttcttt 326  Q
    | ||||| ||||| |||||| ||||       |  || |||||||| |||||||||||||| |||||||||||||||||  | | |||||||||||| ||    
T  12483516 accccctgatgattaaacccatcttattccttctaatgtttctctcctcaaatcccttcggcaaccacttttctttctcctcatcgctctcatcttcctt 12483417  T
Q  327 cccttt 332  Q
    ||||||    
T  12483416 cccttt 12483411  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 118 - 258
Target Start/End: Complemental strand, 12590336 - 12590196
Alignment:
Q  118 ggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatct 217  Q
    |||||||| ||||| |||| ||| |||||||| ||||| |||   || ||||  || ||||| ||||||||  | |||||||||  ||||||||  |||     
T  12590336 ggccatgtgatcatcggaattccagcactaaccgcctccacgacggaattccatccacaatgtgtcataaacgcgcccactgcattgtggctcataatca 12590237  T
Q  218 taacttgtggggcccaacccctaatgatcaaacccttcttc 258  Q
    | |||||||||||||||||||||||||||||||||||||||    
T  12590236 ttacttgtggggcccaacccctaatgatcaaacccttcttc 12590196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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