View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5688_low_7 (Length: 308)
Name: NF5688_low_7
Description: NF5688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5688_low_7 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 7657086 - 7657393
Alignment:
| Q |
1 |
caacaataacaaccagaacaacattccaaatcaaatgaagaacatgcatattgacaatggaaaaggtggtggaggaaacaataacaacaaggggcaaaag |
100 |
Q |
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| T |
7657086 |
caacaataacaaccagaacaacattccaaatcaaatgaagaacatgcatattgacaatggaaaaggtggtggaggaaacaataacaacaaggggcaaaag |
7657185 |
T |
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| Q |
101 |
ggtcctggaaataaccaaaatcagccaaagggtggtggccaacaaggacaaaatcctcaacaacagcagcttcagcaacagttacaacagctgcaacaac |
200 |
Q |
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| T |
7657186 |
ggtcctggaaataaccaaaatcagccaaagggtggtagccaacaaggacaaaatcctcaacaacagcagcttcagcaacagttacaacagctgcaacaac |
7657285 |
T |
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| Q |
201 |
ttcaacatattaagggatttggagatctgaaggtgcctcaattcaaggacatgaacatgaaaatgccaccaccaaatcaaaatacaaatatgaaaggtgt |
300 |
Q |
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| T |
7657286 |
ttcaacatattaaaggatttggagatctgaaggtgcctcaattcaaggacatgaacatgaaaatgccaccaccaaatcaaaatacaaatatgaaaggtgt |
7657385 |
T |
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| Q |
301 |
taagttca |
308 |
Q |
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| T |
7657386 |
taagttca |
7657393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 7651709 - 7651875
Alignment:
| Q |
1 |
caacaataacaaccagaacaacattccaaatcaaatgaagaacatgcatattgacaatggaaaaggtggtggaggaaacaataacaacaaggggcaaaag |
100 |
Q |
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| T |
7651709 |
caacaataacaaccataacaacatggcaaaccagatgaagaacattcaaattgacactggaaaaggtggtggagaaaacaataacaacaatgggcaaaag |
7651808 |
T |
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| Q |
101 |
ggtcctggaaataaccaaaatcagccaaagggtggtggccaacaaggacaaaatcctcaacaacagc |
167 |
Q |
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| T |
7651809 |
gatcctataaataaccaaaaccaaccaaagggaggtggacaacaagagcagaatcctcaacaacagc |
7651875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 184 - 304
Target Start/End: Original strand, 7651868 - 7651988
Alignment:
| Q |
184 |
acaacagctgcaacaacttcaacatattaagggatttggagatctgaaggtgcctcaattcaaggacatgaacatgaaaatgccaccaccaaatcaaaat |
283 |
Q |
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| T |
7651868 |
acaacagcttcaacaacttcagcagatgaaaggacttgaagatcttaaggggactcaattcaaggacatgaacatgatgatgccaccaccaaatcaaaat |
7651967 |
T |
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| Q |
284 |
acaaatatgaaaggtgttaag |
304 |
Q |
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| T |
7651968 |
ccaaatatgaaaggtgttaag |
7651988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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