View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5689-Insertion-2 (Length: 770)

Name: NF5689-Insertion-2
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5689-Insertion-2
NF5689-Insertion-2
[»] chr3 (15 HSPs)
chr3 (7-770)||(47414387-47415150)
chr3 (450-766)||(47398186-47398502)
chr3 (7-174)||(16025238-16025405)
chr3 (394-665)||(4582314-4582585)
chr3 (628-765)||(46543041-46543178)
chr3 (394-661)||(5155299-5155566)
chr3 (394-493)||(46478489-46478588)
chr3 (11-188)||(45883940-45884117)
chr3 (394-493)||(46469889-46469988)
chr3 (21-219)||(46479502-46479700)
chr3 (402-513)||(46490211-46490322)
chr3 (406-480)||(51942303-51942377)
chr3 (573-621)||(46531348-46531396)
chr3 (48-174)||(46473686-46473812)
chr3 (7-72)||(46490568-46490633)
[»] chr8 (4 HSPs)
chr8 (394-664)||(9677452-9677722)
chr8 (394-664)||(9693193-9693463)
chr8 (628-765)||(21465989-21466126)
chr8 (60-117)||(9675950-9676007)
[»] chr4 (4 HSPs)
chr4 (394-667)||(35160544-35160817)
chr4 (458-664)||(15555098-15555304)
chr4 (395-480)||(35154340-35154425)
chr4 (48-174)||(35155175-35155301)
[»] chr2 (2 HSPs)
chr2 (450-513)||(20143689-20143752)
chr2 (450-513)||(20169758-20169821)
[»] chr7 (3 HSPs)
chr7 (33-79)||(16722002-16722048)
chr7 (33-79)||(17699016-17699062)
chr7 (452-493)||(17734715-17734756)


Alignment Details
Target: chr3 (Bit Score: 728; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 728; E-Value: 0
Query Start/End: Original strand, 7 - 770
Target Start/End: Original strand, 47414387 - 47415150
Alignment:
Q  7 agtcttttgtttccgaagcatcaaattgttgattccacacccctttgaagtacagtgcattagcaaagatgagttttgtgaatttgttgactgaccctgg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47414387 agtcttttgtttccgaagcatcaaattgttgattccacacccctttgaagtacagtgcattagcaaagatgagttttgtgaatttgttgactgaccctgg 47414486  T
Q  107 aggaagaattttctcaatagggccatttgtctccttattggcccatgagttcacatcattcgtcactttatcagcctacaaaatcataccaaattttaaa 206  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47414487 aggaagaattttctcaataaggccatttgtctccttattggcccatgagttcacatcattcgtcactttatcagcctacaaaatcataccaaattttaaa 47414586  T
Q  207 ataaagtatgcatcatcaaatttatgcttcaattgtaaaaccatgtcctctgaattatatgcttcaattgtaaaacatgtcctctaaattatgttatgaa 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  47414587 ataaagtatgcatcatcaaatttatgcttcaattgtaaaaccatgtcctctgaattatatgcttcaattgtaaaacatgtcctcaaaattatgttatgaa 47414686  T
Q  307 ataaagtacacaagttgatgtgaaggtagatccattaattaacagaaaataaagcagctagggcatggattgtagtgaaaaagaataataccttgttctt 406  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  47414687 ataaagtacacaaattgatgtgaaggtagatccattaattaacagaaaataaagcagctagggcatggattgtagtgaaaaagaaaaataccttgttctt 47414786  T
Q  407 gaaatctacggaagacaaagcggccttataatcagtatagacgatttgtttgaaggaaggtttaagagaaagggattgttcaacccataggccattgaca 506  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47414787 gaaatctacggaagacaaagcggccttataatcaggatagacgatttgtttgaaggaaggtttaagagaaagggattgttcaacccataggccattgaca 47414886  T
Q  507 aaagagacgcaaggcccactggcaggagaaggatcattgagtatggctgaaaggagatgagaggcaaaggagttgagatgatcaatggattttgagccga 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47414887 aaagagacgcaaggcccactggcaggagaaggatcattgagtatggctgaaaggagatgagaggcaaaggagttgagatgatcaatggattttgagccga 47414986  T
Q  607 ggaagtcgagaagcttttgaagtgtgggaccctcagagccagccgcaatgatgctgagcacggagtggattaacaatggcgaaaacacaacattcttttc 706  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47414987 ggaagtcgagaagcttttgatgtgtggtaccctcagagccagccgcaatgatgatgagcacggagtggattaacaatggcgaaaacacaacattcttttc 47415086  T
Q  707 tttaagttctcgtttggagagcaaatggttggccatggtcatggaaaccttgattaggtcatgg 770  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47415087 tttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggtcatgg 47415150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 450 - 766
Target Start/End: Original strand, 47398186 - 47398502
Alignment:
Q  450 atttgtttgaaggaaggtttaagagaaagggattgttcaacccataggccattgacaaaagagacgcaaggcccactggcaggagaaggatcattgagta 549  Q
    ||||||||||||||||||| ||||||||||| |||||||||||| | ||||||||| ||||||| || ||| |||  ||  ||||||| ||| |||||||    
T  47398186 atttgtttgaaggaaggttgaagagaaagggtttgttcaacccacacgccattgacgaaagagaggcgaggtccatcggtgggagaagcatccttgagta 47398285  T
Q  550 tggctgaaaggagatgagaggcaaaggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgaagtgtgggaccctcagagccagc 649  Q
     | ||||||||||||||||||| |||||||||||||| ||| |||| || || || |||||||||||||||| |||  ||||||||||||||||||||||    
T  47398286 cgactgaaaggagatgagaggcgaaggagttgagatgttcagtggacttggacccaaggaagtcgagaagctcttgttgtgtgggaccctcagagccagc 47398385  T
Q  650 cgcaatgatgctgagcacggagtggattaacaatggcgaaaacacaacattcttttctttaagttctcgtttggagagcaaatggttggccatggtcatg 749  Q
     ||  ||||||| ||||||| ||| |    ||| ||||||||||||||||||||||||||||  | | ||||||||| ||||||| ||||||||||||||    
T  47398386 agcgttgatgcttagcacggtgtgtagcgtcaaaggcgaaaacacaacattcttttctttaaaattttgtttggagaacaaatggctggccatggtcatg 47398485  T
Q  750 gaaaccttgattaggtc 766  Q
    ||||||||| |||||||    
T  47398486 gaaaccttggttaggtc 47398502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 16025405 - 16025238
Alignment:
Q  7 agtcttttgtttccgaagcatcaaattgttgattccacacccctttgaagtacagtgcattagcaaagatgagttttgtgaatttgttgactgaccctgg 106  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||| ||||| |||||||||||||| |||||||| || || |||||||| ||  |||     
T  16025405 agtcttttgtttccgaagcatcaaactgttgatcccacacccctttaaagtaaagtgcattagcaaatatgagtttcgttaagttgttgacagaatctga 16025306  T
Q  107 aggaagaattttctcaatagggccatttgtctccttattggcccatgagttcacatcattcgtcactt 174  Q
    ||| ||||||| ||||||| | |||||||||||||| || |||||| | ||||||||||| |||||||    
T  16025305 aggtagaatttcctcaataagaccatttgtctcctttttagcccataaattcacatcatttgtcactt 16025238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 394 - 665
Target Start/End: Original strand, 4582314 - 4582585
Alignment:
Q  394 ataccttgttcttgaaatctacggaagacaaagcggccttataatcagtatagacgatttgtttgaaggaaggtttaagagaaagggattgttcaaccca 493  Q
    ||||||||||||||||||| || |||||||| | ||||||||||||| || | || ||||||| |||||||||||  |||||| ||  ||| ||||||||    
T  4582314 ataccttgttcttgaaatcaacagaagacaaggtggccttataatcattagatactatttgttggaaggaaggttgcagagaacggctttgatcaaccca 4582413  T
Q  494 taggccattgacaaaagagacgcaaggcccactggcaggagaaggatcattgagtatggctgaaaggagatgagaggcaaaggagttgagatgatcaatg 593  Q
     |  ||||| |  ||||||| |||||| |||| ||  |||| || ||    ||  ||||| |||| ||||||||| ||||||||||||||||||||| |     
T  4582414 cactccattaaggaaagagaggcaaggaccaccggagggagcagcattggagatgatggcagaaacgagatgagaagcaaaggagttgagatgatcagtt 4582513  T
Q  594 gattttgagccgaggaagtcgagaagcttttgaagtgtgggaccctcagagccagccgcaatgatgctgagc 665  Q
    ||||| |||   |||||||||||||||| ||    |||||| || ||||||||||| || || |||||||||    
T  4582514 gatttggagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagc 4582585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 628 - 765
Target Start/End: Complemental strand, 46543178 - 46543041
Alignment:
Q  628 gtgtgggaccctcagagccagccgcaatgatgctgagcacggagtggattaacaatggcgaaaacacaacattcttttctttaagttctcgtttggagag 727  Q
    ||||||||||||||| ||| |||||||| |||||||||||   ||||| | |||| || ||||||||||| ||||||||||||| ||||  ||||||||     
T  46543178 gtgtgggaccctcagcgccggccgcaattatgctgagcacaacgtggagtgacaaaggtgaaaacacaacgttcttttctttaaattcttctttggagaa 46543079  T
Q  728 caaatggttggccatggtcatggaaaccttgattaggt 765  Q
    |||||| ||||| |||||||  |||| |||| ||||||    
T  46543078 caaatgtttggcgatggtcacagaaaacttgtttaggt 46543041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 394 - 661
Target Start/End: Complemental strand, 5155566 - 5155299
Alignment:
Q  394 ataccttgttcttgaaatctacggaagacaaagcggccttataatcagtatagacgatttgtttgaaggaaggtttaagagaaagggattgttcaaccca 493  Q
    |||||||| | |||||||| || |||  ||||| ||||||||||||||   | ||||||| |||||||||||||| ||||||||||| ||||||||||||    
T  5155566 ataccttggttttgaaatcaacagaaagcaaagtggccttataatcagaggacacgatttctttgaaggaaggttgaagagaaagggtttgttcaaccca 5155467  T
Q  494 taggccattgacaaaagagacgcaaggcccactggcaggagaaggatcattgagtatggctgaaaggagatgagaggcaaaggagttgagatgatcaatg 593  Q
    ||  |||||||| || ||||  | ||| ||||  |  |||| ||  ||   ||| | | | ||||  || ||||||||||    ||||||||| ||| ||    
T  5155466 tacaccattgacgaaggagaatcgaggtccacctgtgggagcagcgtcgaagagcacgacagaaacaagttgagaggcaagatcgttgagatggtcagtg 5155367  T
Q  594 gattttgagccgaggaagtcgagaagcttttgaagtgtgggaccctcagagccagccgcaatgatgct 661  Q
    ||||| ||   ||||||||||||||||| |||  |||||||||||||||||||||| || ||||||||    
T  5155366 gatttggacaggaggaagtcgagaagctgttgttgtgtgggaccctcagagccagcagcgatgatgct 5155299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 46478588 - 46478489
Alignment:
Q  394 ataccttgttcttgaaatctacggaagacaaagcggccttataatcagtatagacgatttgtttgaaggaaggtttaagagaaagggattgttcaaccca 493  Q
    |||||||||||| |||||| |||||||||||||| || ||| ||| |||  | |||||||||| ||||||||||| ||||||||||| ||| ||||||||    
T  46478588 ataccttgttctggaaatcaacggaagacaaagctgctttaaaatgagtggacacgatttgttggaaggaaggttgaagagaaagggtttgatcaaccca 46478489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 11 - 188
Target Start/End: Original strand, 45883940 - 45884117
Alignment:
Q  11 ttttgtttccgaagcatcaaattgttgattccacacccctttgaagtacagtgcattagcaaagatgagttttgtgaatttgttgactgaccctggagga 110  Q
    |||||||| ||||| ||||||  ||||||||||  | || || ||||||| |||||||||||| |||||| | || || ||||| ||||||||||||| |    
T  45883940 ttttgttttcgaaggatcaaacggttgattccatgctcccttaaagtacaatgcattagcaaatatgagtctggttaagttgttaactgaccctggagaa 45884039  T
Q  111 agaattttctcaatagggccatttgtctccttattggcccatgagttcacatcattcgtcactttatcagcctacaaa 188  Q
    |||||||  | |||| | ||||||||||| || |  |||||| | ||||| ||||| ||||||| | | |||||||||    
T  45884040 agaatttctttaataagaccatttgtctctttttcagcccataaattcacgtcattggtcacttcaaccgcctacaaa 45884117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 46469988 - 46469889
Alignment:
Q  394 ataccttgttcttgaaatctacggaagacaaagcggccttataatcagtatagacgatttgtttgaaggaaggtttaagagaaagggattgttcaaccca 493  Q
    |||||||||||| |||||| ||||||| ||||| ||| ||||||||||||   |   ||| |||||||||||||| ||||||||||| ||| ||||||||    
T  46469988 ataccttgttctggaaatcaacggaagccaaagtggctttataatcagtaaccattgtttctttgaaggaaggttgaagagaaagggtttgatcaaccca 46469889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 46479700 - 46479502
Alignment:
Q  21 gaagcatcaaattgttgattccacacccctttgaagtacagtgcattagcaaagatgagttttgtgaatttgttgactgaccctggaggaagaattttct 120  Q
    ||||||||||| |  | ||||||| | ||||||||||| |||||||| |||||||||||    ||    |||||||| |||||  ||||||||| ||  |    
T  46479700 gaagcatcaaacttatcattccacgctcctttgaagtatagtgcattggcaaagatgagccgggttgcattgttgaccgacccaagaggaagaagttctt 46479601  T
Q  121 caatagggccatttgtctccttattggcccatgagttcacatcattcgtcactttatcagcctacaaaatcataccaaattttaaaataaagtatgcat 219  Q
     |||| ||||||||||||| || |  |||||||| ||||| ||||| ||||||| | ||||||  |||| |||| ||||||| ||||| || |||||||    
T  46479600 taataaggccatttgtctctttttcagcccatgaattcacttcattggtcacttcaacagcctttaaaaccatatcaaatttaaaaatcaattatgcat 46479502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 402 - 513
Target Start/End: Complemental strand, 46490322 - 46490211
Alignment:
Q  402 ttcttgaaatctacggaagacaaagcggccttataatcagtatagacgatttgtttgaaggaaggtttaagagaaagggattgttcaacccataggccat 501  Q
    ||||||||||| || |||||||||   || ||||||||| || | || ||||||||||||||||||| ||||||||||| || ||| ||||| |  || |    
T  46490322 ttcttgaaatcaacagaagacaaatttgctttataatcattagacacaatttgtttgaaggaaggttgaagagaaagggttttttccacccacacaccgt 46490223  T
Q  502 tgacaaaagaga 513  Q
     |||||||||||    
T  46490222 cgacaaaagaga 46490211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 406 - 480
Target Start/End: Complemental strand, 51942377 - 51942303
Alignment:
Q  406 tgaaatctacggaagacaaagcggccttataatcagtatagacgatttgtttgaaggaaggtttaagagaaaggg 480  Q
    ||||||| ||||||| ||||| ||||||||| ||||   | | |||||||||||||||||||| |||||||||||    
T  51942377 tgaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaaggg 51942303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 621
Target Start/End: Complemental strand, 46531396 - 46531348
Alignment:
Q  573 aaggagttgagatgatcaatggattttgagccgaggaagtcgagaagct 621  Q
    ||||||||||||||||||||||||||||| || ||||||  ||||||||    
T  46531396 aaggagttgagatgatcaatggattttgaaccaaggaaggagagaagct 46531348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 46473812 - 46473686
Alignment:
Q  48 cctttgaagtacagtgcattagcaaagatgagttttgtgaatttgttgactgaccctggaggaagaattttctcaatagggccatttgtctccttattgg 147  Q
    ||||| || |||| |||||||||||||| |||| | |  || ||||||| ||||||| ||||||||||||  | |||| | ||||||||||| || |  |    
T  46473812 cctttaaaatacaatgcattagcaaagacgagtctggataagttgttgattgacccttgaggaagaatttctttaataagaccatttgtctctttttcag 46473713  T
Q  148 cccatgagttcacatcattcgtcactt 174  Q
    |||||  |||||| ||||| |||||||    
T  46473712 cccatatgttcacttcattggtcactt 46473686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 46490633 - 46490568
Alignment:
Q  7 agtcttttgtttccgaagcatcaaattgttgattccacacccctttgaagtacagtgcattagcaa 72  Q
    ||||||| ||||  ||||||||||| |  | ||||||||| ||||||||||| |||||||||||||    
T  46490633 agtctttcgtttttgaagcatcaaacttatcattccacactcctttgaagtatagtgcattagcaa 46490568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 394 - 664
Target Start/End: Original strand, 9677452 - 9677722
Alignment:
Q  394 ataccttgttcttgaaatctacggaagacaaagcggccttataatcagtatagacgatttgtttgaaggaaggtttaagagaaagggattgttcaaccca 493  Q
    ||||||||||  ||||||| || ||||  | || |||||||||||| ||| | | | ||| || ||||||||||| ||||||||||  ||  || |||||    
T  9677452 ataccttgtttatgaaatcaacagaagcgagagtggccttataatcggtagacatggtttcttggaaggaaggttgaagagaaaggtttttctccaccca 9677551  T
Q  494 taggccattgacaaaagagacgcaaggcccactggcaggagaaggatcattgagtatggctgaaaggagatgagaggcaaaggagttgagatgatcaatg 593  Q
    ||  |||||| | ||||||| || ||| |||| || || ||  | ||| ||||| | | | ||||||||||||||| | ||||||||||||||||| |||    
T  9677552 tacaccattggcgaaagagaggcgaggaccaccggaagaagctgcatctttgaggaggacagaaaggagatgagagacgaaggagttgagatgatcgatg 9677651  T
Q  594 gattttgagccgaggaagtcgagaagcttttgaagtgtgggaccctcagagccagccgcaatgatgctgag 664  Q
    |||||  | | ||||||||||||||||| |||  | || ||||||||||||||||| || ||||| |||||    
T  9677652 gatttgaaacggaggaagtcgagaagctgttgttgagtaggaccctcagagccagcagcgatgatactgag 9677722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 394 - 664
Target Start/End: Original strand, 9693193 - 9693463
Alignment:
Q  394 ataccttgttcttgaaatctacggaagacaaagcggccttataatcagtatagacgatttgtttgaaggaaggtttaagagaaagggattgttcaaccca 493  Q
    |||||||||||  |||||| || ||||||||||| ||||||||||||||| | | | ||| |||||||||||||| ||||||||||| ||  || |||||    
T  9693193 ataccttgttccggaaatcaacagaagacaaagcagccttataatcagtagacatggtttctttgaaggaaggttgaagagaaagggttttctctaccca 9693292  T
Q  494 taggccattgacaaaagagacgcaaggcccactggcaggagaaggatcattgagtatggctgaaaggagatgagaggcaaaggagttgagatgatcaatg 593  Q
     |  |||||| | ||||||| |  ||| |||| || || ||  |  || ||||| | | |  |||||||||||||| ||||| ||||||||||||| |||    
T  9693293 cacaccattggcgaaagagaggtgaggaccaccggaagaagttgcgtctttgaggaggacataaaggagatgagagacaaagaagttgagatgatcgatg 9693392  T
Q  594 gattttgagccgaggaagtcgagaagcttttgaagtgtgggaccctcagagccagccgcaatgatgctgag 664  Q
    |||||  | | ||||||||| ||||||| |||  | || ||||| ||||||||| | || |||||||||||    
T  9693393 gatttgaaacggaggaagtcaagaagctgttgttgagtaggaccgtcagagccaacagcgatgatgctgag 9693463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 628 - 765
Target Start/End: Original strand, 21465989 - 21466126
Alignment:
Q  628 gtgtgggaccctcagagccagccgcaatgatgctgagcacggagtggattaacaatggcgaaaacacaacattcttttctttaagttctcgtttggagag 727  Q
    |||| ||||| ||||||||||| || |||||||| | |||   ||||| | | ||||||||||||||||||||  |||||||   |||| |||||||||     
T  21465989 gtgtcggaccttcagagccagcagcgatgatgctcaacacaatgtggagtgataatggcgaaaacacaacattggtttctttgtattcttgtttggagaa 21466088  T
Q  728 caaatggttggccatggtcatggaaaccttgattaggt 765  Q
    |||||| ||||| |||||||  ||||||||| ||||||    
T  21466089 caaatgtttggcaatggtcaaagaaaccttggttaggt 21466126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 9675950 - 9676007
Alignment:
Q  60 agtgcattagcaaagatgagttttgtgaatttgttgactgaccctggaggaagaattt 117  Q
    ||||||||||||||||||||| | || || |||||||| ||||||  |||||||||||    
T  9675950 agtgcattagcaaagatgagtctggttaagttgttgaccgacccttcaggaagaattt 9676007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 8e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 394 - 667
Target Start/End: Complemental strand, 35160817 - 35160544
Alignment:
Q  394 ataccttgttcttgaaatctacggaagacaaagcggccttataatcagtatagacgatttgtttgaaggaaggtttaagagaaagggattgttcaaccca 493  Q
    ||||||||||||||||||| ||   |||||||| ||||||||||||   | | ||||||||||||||||||| || ||||||||||| || ||| | |||    
T  35160817 ataccttgttcttgaaatcaacttcagacaaagtggccttataatcttcagacacgatttgtttgaaggaagattgaagagaaagggttttttccagcca 35160718  T
Q  494 taggccattgacaaaagagacgcaaggcccactggcaggagaaggatcattgagtatggctgaaaggagatgagaggcaaaggagttgagatgatcaatg 593  Q
     |  || | ||| ||||||| |  ||| |||| || || || ||  || ||||| |||   |||||  |||||||| |  ||||||||||||||||| ||    
T  35160717 aacaccgtcgacgaaagagaggtgaggaccaccggaagaagtagcgtctttgaggatgatggaaagttgatgagagactgaggagttgagatgatcagtg 35160618  T
Q  594 gattttgagccgaggaagtcgagaagcttttgaagtgtgggaccctcagagccagccgcaatgatgctgagcac 667  Q
    |||||  | | ||||||||| ||||||| |||  |||| | ||||||||||||||| |  || |||||||||||    
T  35160617 gatttgaaacggaggaagtcaagaagctgttgttgtgttgaaccctcagagccagcagtgattatgctgagcac 35160544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 458 - 664
Target Start/End: Complemental strand, 15555304 - 15555098
Alignment:
Q  458 gaaggaaggtttaagagaaagggattgttcaacccataggccattgacaaaagagacgcaaggcccactggcaggagaaggatcattgagtatggctgaa 557  Q
    |||||||| || ||||||||||| ||| |||||||| |  |||||| | | ||||| ||||||||| | ||  |||| ||  || ||||| ||| | |||    
T  15555304 gaaggaagtttgaagagaaagggtttgctcaacccacacaccattggcgacagagaggcaaggcccgccggagggagcagcgtctttgaggatgacggaa 15555205  T
Q  558 aggagatgagaggcaaaggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgaagtgtgggaccctcagagccagccgcaatga 657  Q
    | |||  |||||   | ||||||||| ||||  ||||||||  ||| ||||||||||||||| | |||  |||||| ||||||||||||||| || ||||    
T  15555204 acgaggcgagagatgacggagttgagttgatggatggatttaaagcggaggaagtcgagaagttgttgctgtgtggaaccctcagagccagcagcgatga 15555105  T
Q  658 tgctgag 664  Q
    |||||||    
T  15555104 tgctgag 15555098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 395 - 480
Target Start/End: Complemental strand, 35154425 - 35154340
Alignment:
Q  395 taccttgttcttgaaatctacggaagacaaagcggccttataatcagtatagacgatttgtttgaaggaaggtttaagagaaaggg 480  Q
    ||||||||||| |||||| || |||||||||| |||||| ||||| |||   ||||| |||||||||||||||| | |||||||||    
T  35154425 taccttgttctggaaatcaacagaagacaaagtggccttgtaatcggtagtcacgatatgtttgaaggaaggttgaggagaaaggg 35154340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 35155301 - 35155175
Alignment:
Q  48 cctttgaagtacagtgcattagcaaagatgagttttgtgaatttgttgactgaccctggaggaagaattttctcaatagggccatttgtctccttattgg 147  Q
    ||||| || |||||||||||||||||||||||| | || || |||||||| ||| || ||| || || ||| | |||| ||||||||||||| || || |    
T  35155301 cctttaaaatacagtgcattagcaaagatgagtctggttaagttgttgaccgactcttgagcaacaacttttttaataaggccatttgtctcttttttag 35155202  T
Q  148 cccatgagttcacatcattcgtcactt 174  Q
    ||||| | ||||| || || |||||||    
T  35155201 cccataaattcacttctttagtcactt 35155175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 450 - 513
Target Start/End: Complemental strand, 20143752 - 20143689
Alignment:
Q  450 atttgtttgaaggaaggtttaagagaaagggattgttcaacccataggccattgacaaaagaga 513  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||  |||| |||||||||||    
T  20143752 atttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccatcgacaaaagaga 20143689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 450 - 513
Target Start/End: Original strand, 20169758 - 20169821
Alignment:
Q  450 atttgtttgaaggaaggtttaagagaaagggattgttcaacccataggccattgacaaaagaga 513  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||  |||| |||||||||||    
T  20169758 atttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccatcgacaaaagaga 20169821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 16722048 - 16722002
Alignment:
Q  33 tgttgattccacacccctttgaagtacagtgcattagcaaagatgag 79  Q
    ||||| |||||||| |||||||| || ||||||||||||||||||||    
T  16722048 tgttgtttccacactcctttgaaatatagtgcattagcaaagatgag 16722002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 17699062 - 17699016
Alignment:
Q  33 tgttgattccacacccctttgaagtacagtgcattagcaaagatgag 79  Q
    ||||| |||||||| |||||||| || ||||||||||||||||||||    
T  17699062 tgttgtttccacactcctttgaaatatagtgcattagcaaagatgag 17699016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 493
Target Start/End: Complemental strand, 17734756 - 17734715
Alignment:
Q  452 ttgtttgaaggaaggtttaagagaaagggattgttcaaccca 493  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||    
T  17734756 ttgtttgaaggaaggttgaagaggaagtgattgttcaaccca 17734715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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