View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689-Insertion-4 (Length: 548)
Name: NF5689-Insertion-4
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689-Insertion-4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 7 - 548
Target Start/End: Complemental strand, 39659218 - 39658677
Alignment:
| Q |
7 |
acaaacaatctcgcccaaaggtacgtgtgggtcttccaaagaagaatcctaaagttctgaaacccgctttcactattcctcccaaactgttacaatccct |
106 |
Q |
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| T |
39659218 |
acaaacaatctcgcccaaaggtacgtgtgggtcttccaaagaagaatcctaaagttctgaaacccgctttcactattcctcccaaactgttacaatccct |
39659119 |
T |
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| Q |
107 |
tgcagaagatcctaaatgggacgataaaggctccgtcacccaaaactattcctctttcggcgttgtttctgatcctaactcccttactgattctcttcaa |
206 |
Q |
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| T |
39659118 |
tgcagaagatcctaaatgggacgataaaggctccgtcacccaaaactattcctctttcggcgttgtttctgatcctaactcccttactgattctcttaaa |
39659019 |
T |
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| Q |
207 |
attccatctgttgccgatgataatgatcccggtagcgatctcgaagaagacggtatgttctcatcaattcatgaattgttaatattttgttgaaattagt |
306 |
Q |
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| T |
39659018 |
attccatctgttgccgatgataatgatcccggtagcgatctcgaagaagatggtatattctcatcaattcatgaattgttaatattttgttgaaattagt |
39658919 |
T |
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| Q |
307 |
attaatattggtaattttgaaggaatgtgaataatttgagtataatttcatggtgtagatttgaaatctgcgttgggaaaaaggagaagagatggtaaaa |
406 |
Q |
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| T |
39658918 |
attaatattggtaattttgaaggaatgtgaataatttgagtatgatttcatggtgtagatttgaaatctgcgttggggaaaaggagaagagatggtaaaa |
39658819 |
T |
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| Q |
407 |
gttcacttcctcaacctttgacttcaattcaacgtcttcatattagtcgtctagttgaaaaatatggagatgattttcaggttcgatttttcactgttgc |
506 |
Q |
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| T |
39658818 |
gttcacttcctcaacctttgacttcaattcaacgtcttcatattagtcgtctagttgaaaaatatggagatgattttcaggttcgatttttcactgttgc |
39658719 |
T |
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| Q |
507 |
tttggtaaaatgtagtgtgttttctgttttcagctttgatag |
548 |
Q |
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| T |
39658718 |
tttggtaaaatgtagtgtgttttctgttttcagctttgatag |
39658677 |
T |
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