View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689-Insertion-5 (Length: 421)
Name: NF5689-Insertion-5
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689-Insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 7 - 381
Target Start/End: Complemental strand, 10599522 - 10599148
Alignment:
| Q |
7 |
aggttggaggtcagtggaagaggctggtcgaagctcgaagagttaagcatggtgcatacatgattgttgttgctccaacggctggaaacaacaacactct |
106 |
Q |
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| T |
10599522 |
aggttggaggtcagtggaagaggctggtcgaagctcgaagagttaagcatggtgcatacatgattgttggtgctccaacggctggaaacaacaacactct |
10599423 |
T |
|
| Q |
107 |
ttacctaagtcttcaacgtctttgaatagtttgatgtgtaactgaggctactgagactggaatttcaagtgctttctatcaaattaattttagtatttta |
206 |
Q |
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| T |
10599422 |
ttacctaagtcttcaacgtctttgaatagtttgatgtgtaactgaggctactgagactggaatttcaagtgctttctatcaaattaattttagtatttta |
10599323 |
T |
|
| Q |
207 |
gtccaagtgaaatatgtaatgtcattgctataagttctataatagttttaatatttctatgttagttttaagttttttgaacttttaatcaaacttattt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10599322 |
gtccaagtgaaatatgtaatgtcattgctataagttctataatagttttaatatttttatgttagttttaagttttttgaacttttaatcaaacttattt |
10599223 |
T |
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| Q |
307 |
atcagacttggcaagtagtgtgaatgagattttttgattatgtttcatgaaatatccaccttgaagtataattat |
381 |
Q |
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| T |
10599222 |
atcagacttggcaagtagtgtgaatgagatttttttattatgtttcatgaaatatccaccttaaagtataattat |
10599148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 7 - 381
Target Start/End: Original strand, 6254741 - 6255103
Alignment:
| Q |
7 |
aggttggaggtcagtggaagaggctggtcgaagctcgaagagttaagcatggtgcatacatgattgttgttgctccaacggctggaaacaacaacactct |
106 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
6254741 |
aggttggaggtcagtggaagaggctggtcgaaggtcgaagagttaagcatggtgcatacatgattgttcgtgctccaacggctggaaacaacatcactct |
6254840 |
T |
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| Q |
107 |
ttacctaagtcttcaacgtctttgaatagtttgatgtgtaactgaggctactgagactggaatttcaagtgctttctatcaaattaattttagtatttta |
206 |
Q |
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||||||||||||| || |||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6254841 |
ttacctaagtcttaaatgtctttgaattgtttgatgtgt-------------gagattggaatttcaagtgctttctatcaaattaatcttagtatttta |
6254927 |
T |
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| Q |
207 |
gtccaagtgaaatatgtaatgtcattgctataagttctataatagttttaatatttctatgttagtttt-aagttttttgaacttttaatcaaacttatt |
305 |
Q |
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| T |
6254928 |
gtccaagtgaaatatgtaatgtcattgctataagttctataatagttttaatatttctatgttagttttaaagttttttgaacttttaatcaagcttatg |
6255027 |
T |
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| Q |
306 |
tatcagacttggcaagtagtgtgaatgagattttttgattatgtttcatgaaatatccaccttgaagtataattat |
381 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6255028 |
tatcagacttggcaagtagtctgaatgagatattttgattatgtttcatgaaatatccaccttaaagtataattat |
6255103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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