View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5689-Insertion-6 (Length: 430)

Name: NF5689-Insertion-6
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5689-Insertion-6
NF5689-Insertion-6
[»] chr3 (14 HSPs)
chr3 (13-183)||(25882786-25882956)
chr3 (233-426)||(25882954-25883147)
chr3 (323-428)||(1475349-1475454)
chr3 (322-428)||(11521080-11521186)
chr3 (323-421)||(12573231-12573329)
chr3 (323-421)||(13549695-13549793)
chr3 (337-428)||(33914631-33914721)
chr3 (322-428)||(12409399-12409504)
chr3 (348-426)||(21017844-21017921)
chr3 (322-425)||(25919536-25919639)
chr3 (348-419)||(19219289-19219359)
chr3 (322-420)||(8402627-8402725)
chr3 (325-386)||(25188701-25188762)
chr3 (337-420)||(21829209-21829291)
[»] chr2 (11 HSPs)
chr2 (322-417)||(35707743-35707838)
chr2 (322-427)||(25473977-25474082)
chr2 (322-428)||(21505208-21505314)
chr2 (326-428)||(19949623-19949725)
chr2 (323-410)||(1733042-1733128)
chr2 (361-428)||(30998750-30998817)
chr2 (337-420)||(32619598-32619680)
chr2 (358-416)||(16593833-16593891)
chr2 (349-416)||(28278504-28278570)
chr2 (384-420)||(15829136-15829172)
chr2 (360-420)||(21844706-21844766)
[»] chr8 (14 HSPs)
chr8 (325-417)||(13082017-13082109)
chr8 (322-420)||(16054234-16054332)
chr8 (337-428)||(12956445-12956535)
chr8 (322-412)||(29047401-29047491)
chr8 (343-428)||(24120193-24120277)
chr8 (324-428)||(14977176-14977280)
chr8 (322-416)||(16052358-16052452)
chr8 (322-428)||(28901409-28901515)
chr8 (322-414)||(11310287-11310379)
chr8 (326-419)||(26882352-26882445)
chr8 (358-428)||(5570210-5570280)
chr8 (322-428)||(22894599-22894709)
chr8 (329-428)||(6358645-6358744)
chr8 (337-428)||(32239243-32239333)
[»] chr1 (16 HSPs)
chr1 (322-426)||(8247728-8247832)
chr1 (322-425)||(12423986-12424089)
chr1 (323-412)||(21451900-21451989)
chr1 (361-428)||(11770063-11770130)
chr1 (337-424)||(26657432-26657518)
chr1 (323-428)||(23519824-23519930)
chr1 (322-428)||(30675423-30675530)
chr1 (322-405)||(30781700-30781783)
chr1 (337-428)||(12810278-12810368)
chr1 (357-428)||(24903364-24903435)
chr1 (337-420)||(23223367-23223449)
chr1 (349-419)||(25730649-25730718)
chr1 (359-428)||(50047158-50047227)
chr1 (359-428)||(18301072-18301143)
chr1 (379-428)||(25494548-25494597)
chr1 (348-412)||(25266430-25266492)
[»] chr4 (15 HSPs)
chr4 (322-428)||(9783052-9783158)
chr4 (323-428)||(1676364-1676469)
chr4 (323-428)||(1682892-1682997)
chr4 (322-428)||(25315300-25315406)
chr4 (343-426)||(5906791-5906873)
chr4 (323-420)||(27302719-27302816)
chr4 (348-420)||(34864368-34864439)
chr4 (326-428)||(4953626-4953728)
chr4 (322-428)||(12111401-12111505)
chr4 (325-428)||(18897934-18898037)
chr4 (337-420)||(25050142-25050224)
chr4 (323-414)||(1696652-1696741)
chr4 (322-392)||(15192143-15192213)
chr4 (337-420)||(31859957-31860039)
chr4 (359-428)||(46647173-46647242)
[»] chr7 (14 HSPs)
chr7 (323-420)||(22067883-22067980)
chr7 (312-428)||(315115-315231)
chr7 (322-428)||(29544459-29544565)
chr7 (322-428)||(20446179-20446285)
chr7 (326-428)||(7815267-7815369)
chr7 (322-410)||(21471737-21471825)
chr7 (326-377)||(4092616-4092667)
chr7 (322-428)||(23124841-23124946)
chr7 (370-428)||(1255282-1255340)
chr7 (323-428)||(9066073-9066178)
chr7 (322-426)||(7142038-7142142)
chr7 (322-420)||(18496505-18496603)
chr7 (372-426)||(20470881-20470935)
chr7 (352-428)||(2632505-2632581)
[»] chr5 (17 HSPs)
chr5 (322-426)||(12340085-12340187)
chr5 (321-428)||(17382104-17382211)
chr5 (309-428)||(15205572-15205689)
chr5 (336-428)||(16634000-16634092)
chr5 (337-428)||(25594761-25594851)
chr5 (322-427)||(17027467-17027572)
chr5 (363-428)||(24517335-24517400)
chr5 (336-420)||(30072133-30072216)
chr5 (322-428)||(24841693-24841799)
chr5 (343-428)||(18222455-18222539)
chr5 (322-392)||(22229749-22229819)
chr5 (325-406)||(25075328-25075408)
chr5 (325-406)||(25133297-25133377)
chr5 (348-417)||(11274411-11274479)
chr5 (359-420)||(23157865-23157926)
chr5 (359-428)||(26330137-26330206)
chr5 (331-391)||(22754898-22754957)
[»] chr6 (6 HSPs)
chr6 (325-420)||(15574868-15574962)
chr6 (326-427)||(13759521-13759622)
chr6 (325-428)||(15998454-15998557)
chr6 (322-416)||(30355266-30355360)
chr6 (359-420)||(14924494-14924555)
chr6 (322-405)||(15576254-15576337)
[»] scaffold0002 (1 HSPs)
scaffold0002 (322-428)||(446945-447051)
[»] scaffold0171 (2 HSPs)
scaffold0171 (323-420)||(6137-6234)
scaffold0171 (322-387)||(21337-21402)
[»] scaffold0386 (2 HSPs)
scaffold0386 (348-428)||(8778-8857)
scaffold0386 (348-428)||(13140-13219)
[»] scaffold0188 (1 HSPs)
scaffold0188 (323-387)||(27064-27128)


Alignment Details
Target: chr3 (Bit Score: 155; Significance: 4e-82; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 13 - 183
Target Start/End: Original strand, 25882786 - 25882956
Alignment:
Q  13 cactttagactgccaaccacggaagaatacatcagaaagacaaatccatatgagcattaaacctccttcattgccaaagtgaaacttcaatgagcatctg 112  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25882786 cactttagactgccaaccatggaggaatacatcagaaagacaaatccatatgagcattaaacctccttcattgccaaaatgaaacttcaatgagcatctg 25882885  T
Q  113 attctctgaagtgtattatctttccccacatctttatgcgagctgttcccatatggttctctcacttctta 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25882886 attctctgaagtgtattatctttccccacatctttatgcgagctgctcccatatggttctctcacttctta 25882956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 233 - 426
Target Start/End: Original strand, 25882954 - 25883147
Alignment:
Q  233 ttactacaaggaggataactcaggaaagcttagtgcgcttggttggtcttaggaaaatgcaagatgagtctataagatcattgatggttgagcatcatat 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  25882954 ttactacaaggaggataactcaggaaagcttagtgcgcttggttggtcttaggaaaatgcaagatgagtctataagatcattgatgacagagcatcatat 25883053  T
Q  333 gacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatatt 426  Q
    || | |||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||  ||||||||| |||||    
T  25883054 gatactttggctatatttctagtactttttcattgcatttgaagaaaaataagatgagagtcagaagagttgtcaattttttgaggaacatatt 25883147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 323 - 428
Target Start/End: Complemental strand, 1475454 - 1475349
Alignment:
Q  323 agcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaata 422  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||   |||||||||||||| |||| |||| ||||||||||||||||||    
T  1475454 agcatcatatgacattttggctatgtttttagtactttttctttgcatttgaagtctaataagatgagagttagaggagttttcaatggtttgaggaata 1475355  T
Q  423 tattgt 428  Q
    ||||||    
T  1475354 tattgt 1475349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 322 - 428
Target Start/End: Original strand, 11521080 - 11521186
Alignment:
Q  322 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 421  Q
    ||||||||||| |||||||| ||||| ||||| ||||||||| |||||||||||||||||||||||||| ||  ||| |||||||||||||||||||||     
T  11521080 gagcatcatattacattttggctataattttaatactttttcattgcatttgaagaaaaataagatgagcgttggaggagttgtcaatggtttgaggaac 11521179  T
Q  422 atattgt 428  Q
    |||||||    
T  11521180 atattgt 11521186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 323 - 421
Target Start/End: Original strand, 12573231 - 12573329
Alignment:
Q  323 agcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 421  Q
    |||||||||||||||||||  ||| |||||||||||||||||||||||| ||||| ||||||||||||||| |||  | ||||||||||||||||||||    
T  12573231 agcatcatatgacattttggttatgtttttagtactttttctttgcattagaagacaaataagatgagagttagatgatttgtcaatggtttgaggaat 12573329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 323 - 421
Target Start/End: Original strand, 13549695 - 13549793
Alignment:
Q  323 agcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 421  Q
    |||||||||||||||||||  ||| |||||||||||||||||||||||| ||||| ||||||||||||||| |||  | ||||||||||||||||||||    
T  13549695 agcatcatatgacattttggttatgtttttagtactttttctttgcattagaagacaaataagatgagagttagatgatttgtcaatggtttgaggaat 13549793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 337 - 428
Target Start/End: Complemental strand, 33914721 - 33914631
Alignment:
Q  337 ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgt 428  Q
    |||| ||||| |||||||||||||| |||||||||| |||| ||||||||||||||| | || ||||||||| ||||||||||| |||||||    
T  33914721 tttttactatgtttttagtactttt-ctttgcatttcaagacaaataagatgagagttataggagttgtcaacggtttgaggaacatattgt 33914631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 322 - 428
Target Start/End: Original strand, 12409399 - 12409504
Alignment:
Q  322 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 421  Q
    |||||||| ||||||||||||||||||||||||||| |||| |||| ||||||||||||||||  || |||  | |  ||||||||||||||||| |||     
T  12409399 gagcatcacatgacattttgactatatttttagtac-ttttatttgtatttgaagaaaaataacttgggagataaaagagttgtcaatggtttgaagaac 12409497  T
Q  422 atattgt 428  Q
    |||||||    
T  12409498 atattgt 12409504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 348 - 426
Target Start/End: Original strand, 21017844 - 21017921
Alignment:
Q  348 tttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatatt 426  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||| ||||  ||||||||| |||||    
T  21017844 tttttagta-tttttctttgcatttgaagaaaaataagatgagagttagaggagttggcaataatttgaggaacatatt 21017921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 425
Target Start/End: Complemental strand, 25919639 - 25919536
Alignment:
Q  322 gagcatcatatgacattt-tgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    ||||||||||||| |||| ||  ||| |||||||||| ||| ||||| ||||||||| ||||||||||||||| |||  | |||||||||||||||||||    
T  25919639 gagcatcatatgatatttctggttatgtttttagtacattt-ctttgaatttgaagacaaataagatgagagttagatgatttgtcaatggtttgaggaa 25919541  T
Q  421 tatat 425  Q
     ||||    
T  25919540 catat 25919536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 419
Target Start/End: Complemental strand, 19219359 - 19219289
Alignment:
Q  348 tttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgagga 419  Q
    ||||||||| ||||||||||| |||||||| ||||||||||||||| |  | ||||||||||||||||||||    
T  19219359 tttttagta-tttttctttgcttttgaagataaataagatgagagttattggagttgtcaatggtttgagga 19219289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 420
Target Start/End: Complemental strand, 8402725 - 8402627
Alignment:
Q  322 gagcatcatatgacatttt-gactatattttta-gtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgagga 419  Q
    ||||||||||||| ||||| |||||| |||||| |||  ||| ||||||||||||||  ||||||||||  | | |||| ||||||||||||||||||||    
T  8402725 gagcatcatatgatattttagactatgtttttatgta--tttactttgcatttgaaggcaaataagatgtaatttagaggagttgtcaatggtttgagga 8402628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 386
Target Start/End: Original strand, 25188701 - 25188762
Alignment:
Q  325 catcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataaga 386  Q
    |||||||||| |||| | ||||||||||| |  |||||||||||||||||||| ||||||||    
T  25188701 catcatatgatatttaggctatatttttacttatttttctttgcatttgaagacaaataaga 25188762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 420
Target Start/End: Complemental strand, 21829291 - 21829209
Alignment:
Q  337 ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    ||||||||||||||||| |  ||||  ||||||||||||| ||||||||| |  | | |||| |||||||||||||||||||||    
T  21829291 ttttgactatatttttatttatttta-tttgcatttgaaggaaaataagaggtcatttagaggagttgtcaatggtttgaggaa 21829209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 322 - 417
Target Start/End: Original strand, 35707743 - 35707838
Alignment:
Q  322 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgag 417  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  35707743 gagcatcatatgacattttgactatgtttttagtactttttctttgtatttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 35707838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 322 - 427
Target Start/End: Original strand, 25473977 - 25474082
Alignment:
Q  322 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 421  Q
    |||||||||||||||||||| |||| |||||||||| |||| ||| |||||||||| ||||||||||||||| |||| |||||||||| ||||||||||     
T  25473977 gagcatcatatgacattttggctatgtttttagtacattttattttcatttgaagacaaataagatgagagttagaggagttgtcaattgtttgaggaac 25474076  T
Q  422 atattg 427  Q
    ||||||    
T  25474077 atattg 25474082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 322 - 428
Target Start/End: Complemental strand, 21505314 - 21505208
Alignment:
Q  322 gagcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    ||||||||||||| ||||| | |||| ||||||||| |||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||     
T  21505314 gagcatcatatgatatttttggctatgtttttagta-tttttctttgcatttgaagacaaataagatgagagttagagtagttgtcaatggtttgaggag 21505216  T
Q  421 tatattgt 428  Q
     |||||||    
T  21505215 catattgt 21505208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 326 - 428
Target Start/End: Complemental strand, 19949725 - 19949623
Alignment:
Q  326 atcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatat 425  Q
    ||||||||| |||||  |||| |||||||||||||||||||| ||||||||| |||||| |||||||   ||| |||||| ||| |||||||||| ||||    
T  19949725 atcatatgatattttttctatgtttttagtactttttctttgtatttgaagataaataacatgagagattgaggagttgttaatagtttgaggaacatat 19949626  T
Q  426 tgt 428  Q
    |||    
T  19949625 tgt 19949623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 323 - 410
Target Start/End: Original strand, 1733042 - 1733128
Alignment:
Q  323 agcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatg 410  Q
    ||||||||||||||||||   ||| ||||||||||||||| ||| |||||||||| |||| |||||||||| |||| |||||||||||    
T  1733042 agcatcatatgacattttagttatgtttttagtacttttttttt-catttgaagacaaatgagatgagagttagaggagttgtcaatg 1733128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 361 - 428
Target Start/End: Original strand, 30998750 - 30998817
Alignment:
Q  361 ttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgt 428  Q
    |||||||| |||||||| ||||||||||||||| |||  ||||||||||||||||||||| |||||||    
T  30998750 ttctttgcctttgaagacaaataagatgagagttagatgagttgtcaatggtttgaggaacatattgt 30998817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 420
Target Start/End: Original strand, 32619598 - 32619680
Alignment:
Q  337 ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    ||||| ||||||||||||||||||| ||||||||||||||| ||||||  ||||||  |||| |||||| ||||||| ||||||    
T  32619598 ttttggctatatttttagtactttt-ctttgcatttgaagacaaataacttgagagatagaggagttgttaatggttagaggaa 32619680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 416
Target Start/End: Complemental strand, 16593891 - 16593833
Alignment:
Q  358 tttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttga 416  Q
    ||||| |||||||||||||| ||||||||| ||||| | || |||||||||||||||||    
T  16593891 tttttttttgcatttgaagacaaataagattagagttataggagttgtcaatggtttga 16593833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 416
Target Start/End: Complemental strand, 28278570 - 28278504
Alignment:
Q  349 ttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttga 416  Q
    ||||||||||||| ||||||||||||||  |||||||| |||||| |||| | || ||||||||||||    
T  28278570 ttttagtactttt-ctttgcatttgaaggcaaataagaagagagttagaggatttctcaatggtttga 28278504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 420
Target Start/End: Original strand, 15829136 - 15829172
Alignment:
Q  384 agatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    |||||||||| |||| |||||||||||||||||||||    
T  15829136 agatgagagttagaggagttgtcaatggtttgaggaa 15829172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 420
Target Start/End: Complemental strand, 21844766 - 21844706
Alignment:
Q  360 tttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    |||||||||||||||||| ||||||| ||  | | |||| ||||||||||||||| |||||    
T  21844766 tttctttgcatttgaagacaaataagttgtaatttagaggagttgtcaatggttttaggaa 21844706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 325 - 417
Target Start/End: Complemental strand, 13082109 - 13082017
Alignment:
Q  325 catcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgag 417  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||| ||||||    
T  13082109 catcatatgacattttgattatgtttttagtactttttctttgcatttgaagacaaataagatgagagttagaggagttgtcaatgatttgag 13082017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 322 - 420
Target Start/End: Original strand, 16054234 - 16054332
Alignment:
Q  322 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    |||||||||||||||||||| |||| | |||||||||||||||||||||||||||| ||||||||| ||||| |||| ||||||||||| ||| |||||    
T  16054234 gagcatcatatgacattttggctatgtctttagtactttttctttgcatttgaagacaaataagataagagttagaggagttgtcaatgatttaaggaa 16054332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 337 - 428
Target Start/End: Original strand, 12956445 - 12956535
Alignment:
Q  337 ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgt 428  Q
    ||||| |||| |||||||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| |||||||    
T  12956445 ttttgtctatgtttttagtactttt-ctttgcatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaaaatattgt 12956535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 322 - 412
Target Start/End: Complemental strand, 29047491 - 29047401
Alignment:
Q  322 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggt 412  Q
    ||||||||||||| | |||| ||||||| ||||||||||||||||||||||||| | ||||||||||||||| |||| |||||||||||||    
T  29047491 gagcatcatatgataatttggctatattattagtactttttctttgcatttgaaaacaaataagatgagagttagaggagttgtcaatggt 29047401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 343 - 428
Target Start/End: Original strand, 24120193 - 24120277
Alignment:
Q  343 ctatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgt 428  Q
    |||| |||||||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||| |||||||||||||||||||    
T  24120193 ctatgtttttagtactttt-ctttgcatttgaagagaaataagatgagagttagaggagttgtcaacggtttgaggaatatattgt 24120277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 324 - 428
Target Start/End: Complemental strand, 14977280 - 14977176
Alignment:
Q  324 gcatcatatgacattttga-ctatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaata 422  Q
    ||||||||||| ||||| | |||| ||||||| |||||| |||||||||| |||| ||||||||||||||| |||| ||||||||||||||||||||| |    
T  14977280 gcatcatatgatatttttaactatgtttttagcactttt-ctttgcattttaagacaaataagatgagagttagaggagttgtcaatggtttgaggaaca 14977182  T
Q  423 tattgt 428  Q
    ||||||    
T  14977181 tattgt 14977176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 322 - 416
Target Start/End: Complemental strand, 16052452 - 16052358
Alignment:
Q  322 gagcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttga 416  Q
    ||||||||||||| ||||| | |||| ||||||||||||||  ||||||||||| || |||||| |||||||| |||| |||||||||||||||||    
T  16052452 gagcatcatatgatatttttggctatgtttttagtactttta-tttgcatttgaggacaaataaaatgagagttagaggagttgtcaatggtttga 16052358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 322 - 428
Target Start/End: Complemental strand, 28901515 - 28901409
Alignment:
Q  322 gagcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    ||||||||||||| ||||| | ||||  ||||| ||||||| ||||||||||||| | ||||||| ||||||  |||| |||||||||||||||||||||    
T  28901515 gagcatcatatgaaatttttggctatgcttttaatactttt-ctttgcatttgaatacaaataagttgagagatagaggagttgtcaatggtttgaggaa 28901417  T
Q  421 tatattgt 428  Q
     |||||||    
T  28901416 catattgt 28901409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 414
Target Start/End: Complemental strand, 11310379 - 11310287
Alignment:
Q  322 gagcatcatatgacattttga-ctatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggttt 414  Q
    ||||||||||||| |||||   |||| |||||||||||| | ||||||||||||||||||||||| ||||||  ||| || |||||||||||||    
T  11310379 gagcatcatatgatattttttgctatgtttttagtacttat-ctttgcatttgaagaaaaataagttgagagatagaaaaattgtcaatggttt 11310287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 419
Target Start/End: Original strand, 26882352 - 26882445
Alignment:
Q  326 atcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgagga 419  Q
    |||||||||||| ||| |||| |||||||||||||||||| ||| | ||||| |||||| |||||| | | || ||||| ||||||||| ||||    
T  26882352 atcatatgacatcttggctatgtttttagtactttttcttcgcaatcgaagacaaataaaatgagatttaaaggagttgccaatggtttaagga 26882445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 428
Target Start/End: Complemental strand, 5570280 - 5570210
Alignment:
Q  358 tttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgt 428  Q
    ||||| |||||||||||||||||||||||||||| |   || ||||||||||  ||||||||| |||||||    
T  5570280 tttttttttgcatttgaagaaaaataagatgagatttgaaggagttgtcaatactttgaggaacatattgt 5570210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 428
Target Start/End: Complemental strand, 22894709 - 22894599
Alignment:
Q  322 gagcatcatatgacattttgac-tatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaa----gttgtcaatggtttga 416  Q
    ||||||||||||||||||| |  ||| |||||||||||||| ||| ||||||||||  ||||||| ||||||  ||||||    ||||||||||||||||    
T  22894709 gagcatcatatgacatttttaggtatgtttttagtactttt-cttcgcatttgaagccaaataagttgagagatagagaactaagttgtcaatggtttga 22894611  T
Q  417 ggaatatattgt 428  Q
    || | |||||||    
T  22894610 ggtacatattgt 22894599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 428
Target Start/End: Original strand, 6358645 - 6358744
Alignment:
Q  329 atatgacattttga-ctatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattg 427  Q
    |||||||||||||  |||| ||||||||||||||  |||||||||||||| | ||||| ||||||  |||| |||||| ||||||||| | || ||||||    
T  6358645 atatgacattttgggctatgtttttagtactttta-tttgcatttgaagacatataagttgagagatagaggagttgttaatggtttgggaaacatattg 6358743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 428
Target Start/End: Original strand, 32239243 - 32239333
Alignment:
Q  337 ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgt 428  Q
    ||||| |||| ||||||| |||||| |||| |||||||||| | ||||||| | | | |||| |||||||||||||||||| || |||||||    
T  32239243 ttttggctatgtttttagcactttt-ctttacatttgaagatagataagataataattagaggagttgtcaatggtttgagtaacatattgt 32239333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 322 - 426
Target Start/End: Complemental strand, 8247832 - 8247728
Alignment:
Q  322 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 421  Q
    ||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||| ||||||||||||||| |||| || | ||||||||||||||||     
T  8247832 gagcatcatatgacattttgactatgtttttaataccttttctttgcatttgaagacaaataagatgagagttagaggagatatcaatggtttgaggaac 8247733  T
Q  422 atatt 426  Q
    |||||    
T  8247732 atatt 8247728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 322 - 425
Target Start/End: Complemental strand, 12424089 - 12423986
Alignment:
Q  322 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 421  Q
    ||||||||||||| |||||| |||| |||||||||||||||||||||||||||||| |||||||||||||| |||||  ||||| ||||||||||||||     
T  12424089 gagcatcatatgatattttggctatgtttttagtactttttctttgcatttgaagacaaataagatgagagacagaggcgttgttaatggtttgaggaac 12423990  T
Q  422 atat 425  Q
    ||||    
T  12423989 atat 12423986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 21451989 - 21451900
Alignment:
Q  323 agcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggt 412  Q
    ||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| ||||||||||||||  |||  |||||||||||||    
T  21451989 agcatcatatgacattttggctatgtttttagtacgttttctttgcatttgaagacaaataagatgagagatagaagagttgtcaatggt 21451900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 361 - 428
Target Start/End: Complemental strand, 11770130 - 11770063
Alignment:
Q  361 ttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgt 428  Q
    ||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| ||||| |||||||    
T  11770130 ttctttgcatttgaagataaataagatgagagttagagaatttgtcaatggtttaaggaacatattgt 11770063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 337 - 424
Target Start/End: Original strand, 26657432 - 26657518
Alignment:
Q  337 ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatata 424  Q
    |||||||||| |||||| ||||||| ||||||||||||||| ||||| | ||||||  |||| |||||||||||||||||||||||||    
T  26657432 ttttgactatgtttttattactttt-ctttgcatttgaagacaaatatgttgagagatagaggagttgtcaatggtttgaggaatata 26657518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 323 - 428
Target Start/End: Complemental strand, 23519930 - 23519824
Alignment:
Q  323 agcatcatatgacattttgacta--tatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    ||||||||||||| |||||||||  | |||||||||| |||||||||| |||||||| ||||| ||||||||  ||| ||||||| ||| ||||||||||    
T  23519930 agcatcatatgaccttttgactatgtttttttagtac-ttttctttgcttttgaagacaaatatgatgagagatagaaaagttgttaatagtttgaggaa 23519832  T
Q  421 tatattgt 428  Q
     |||||||    
T  23519831 catattgt 23519824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 322 - 428
Target Start/End: Original strand, 30675423 - 30675530
Alignment:
Q  322 gagcatcatatgacattttga-ctatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    |||||||||||||||||||   |||| ||||||| ||||||  ||| |||||| ||| ||||||||||| | | |||| |||||||||||||||||||||    
T  30675423 gagcatcatatgacattttttgctatgtttttagaacttttctttttcatttgtagacaaataagatgaaaattagaggagttgtcaatggtttgaggaa 30675522  T
Q  421 tatattgt 428  Q
     |||||||    
T  30675523 catattgt 30675530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 322 - 405
Target Start/End: Original strand, 30781700 - 30781783
Alignment:
Q  322 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgt 405  Q
    |||||||||  || |||||  |||| ||||||||| |||||||||||||||||||| ||||||||||||||| |||| ||||||    
T  30781700 gagcatcatgcgatatttttgctatgtttttagtaatttttctttgcatttgaagacaaataagatgagagttagaggagttgt 30781783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 428
Target Start/End: Original strand, 12810278 - 12810368
Alignment:
Q  337 ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgt 428  Q
    |||| ||||| |||||||||||||| ||||  |||| |||| ||||||| ||||||  |||| ||||||||||||||||||||| |||||||    
T  12810278 tttttactatgtttttagtactttt-ctttatatttaaagacaaataagttgagagatagaggagttgtcaatggtttgaggaacatattgt 12810368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 428
Target Start/End: Complemental strand, 24903435 - 24903364
Alignment:
Q  357 ctttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgt 428  Q
    ||||||||||||||||||||| ||||| ||||||| | || | ||||||||||| ||||||||| |||||||    
T  24903435 ctttttctttgcatttgaagacaaatatgatgagaattagtggagttgtcaatgatttgaggaacatattgt 24903364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 420
Target Start/End: Original strand, 23223367 - 23223449
Alignment:
Q  337 ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    ||||| |||| |||| ||||||||| ||||||||||  ||| || ||||||| |||| |||| |||||||||||||||||||||    
T  23223367 ttttggctatgttttaagtactttt-ctttgcattttgagacaattaagatgggagttagaggagttgtcaatggtttgaggaa 23223449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 419
Target Start/End: Complemental strand, 25730718 - 25730649
Alignment:
Q  349 ttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgagga 419  Q
    ||||||||||||| ||||||||||||| | ||||||||||||||| ||||  | ||||||||| |||||||    
T  25730718 ttttagtactttt-ctttgcatttgaaaacaaataagatgagagttagagggggtgtcaatggcttgagga 25730649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 428
Target Start/End: Original strand, 50047158 - 50047227
Alignment:
Q  359 ttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgt 428  Q
    ||||||||||||||||||| ||||||||||| |   |||| ||||||||||| |||||| || |||||||    
T  50047158 ttttctttgcatttgaagacaaataagatgaaaagtagaggagttgtcaatgatttgagaaacatattgt 50047227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 428
Target Start/End: Complemental strand, 18301143 - 18301072
Alignment:
Q  359 ttttctttgcatttgaagaaaaataaga--tgagagtcagagaagttgtcaatggtttgaggaatatattgt 428  Q
    ||||||||||||||||||| ||| || |  ||||||| | ||  ||||||||||||||||||||||||||||    
T  18301143 ttttctttgcatttgaagacaaacaaaaaatgagagttataggggttgtcaatggtttgaggaatatattgt 18301072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 428
Target Start/End: Complemental strand, 25494597 - 25494548
Alignment:
Q  379 aaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgt 428  Q
    ||||| ||||| ||| |||| ||||||||||||||||||||| |||||||    
T  25494597 aaataggatgaaagttagaggagttgtcaatggtttgaggaacatattgt 25494548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 25266492 - 25266430
Alignment:
Q  348 tttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggt 412  Q
    |||||||||||||| ||||||||||||||| | | ||||| ||||  ||||||||||||||||||    
T  25266492 tttttagtactttt-ctttgcatttgaagacaga-aagataagagatagagaagttgtcaatggt 25266430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 322 - 428
Target Start/End: Complemental strand, 9783158 - 9783052
Alignment:
Q  322 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 421  Q
    |||||||||||||||||||| |||| ||||||||||||||||||| |||||||||  |||| |||||||||| |||| |||||||||| ||||||||||     
T  9783158 gagcatcatatgacattttgcctatgtttttagtactttttctttacatttgaaggcaaatgagatgagagttagaggagttgtcaatagtttgaggaac 9783059  T
Q  422 atattgt 428  Q
    |||||||    
T  9783058 atattgt 9783052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 323 - 428
Target Start/End: Complemental strand, 1676469 - 1676364
Alignment:
Q  323 agcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 421  Q
    |||||||||||||||||| |  ||||||||| |||||||| |||| |||||||||| ||||||||||| ||  |||| |||||||||||||||||||||     
T  1676469 agcatcatatgacatttttggttatattttttgtactttt-ctttacatttgaagacaaataagatgaaagatagaggagttgtcaatggtttgaggaac 1676371  T
Q  422 atattgt 428  Q
    |||||||    
T  1676370 atattgt 1676364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 323 - 428
Target Start/End: Complemental strand, 1682997 - 1682892
Alignment:
Q  323 agcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 421  Q
    |||||||||||||||||| |  ||||||||| |||||||| |||| |||||||||| ||||||||||| ||  |||| |||||||||||||||||||||     
T  1682997 agcatcatatgacatttttggttatattttttgtactttt-ctttacatttgaagacaaataagatgaaagatagaggagttgtcaatggtttgaggaac 1682899  T
Q  422 atattgt 428  Q
    |||||||    
T  1682898 atattgt 1682892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 322 - 428
Target Start/End: Complemental strand, 25315406 - 25315300
Alignment:
Q  322 gagcatcatatgacattttgactat-atttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    |||||||||||||||||||   |||  |||||||||| |||||||| |||||||||| ||||||||||||||  |||| ||||||||||| |||||||||    
T  25315406 gagcatcatatgacattttagttatgttttttagtac-ttttctttacatttgaagataaataagatgagagatagaggagttgtcaatgctttgaggaa 25315308  T
Q  421 tatattgt 428  Q
     |||||||    
T  25315307 catattgt 25315300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 343 - 426
Target Start/End: Complemental strand, 5906873 - 5906791
Alignment:
Q  343 ctatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatatt 426  Q
    |||| ||||||||||||||  |||||||||||||| ||| ||||||||||| |||| | ||||||||||||||||||| |||||    
T  5906873 ctatgtttttagtactttta-tttgcatttgaagacaaacaagatgagagttagaggaattgtcaatggtttgaggaacatatt 5906791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 420
Target Start/End: Original strand, 27302719 - 27302816
Alignment:
Q  323 agcatcatatgacattttgactatattttt-agtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    |||||||||| ||||||||||||| ||||| | || |||| | ||||||||||||| ||||| ||||| ||  ||||||||||||||||||||||||||    
T  27302719 agcatcatataacattttgactatgttttttaataatttt-cgttgcatttgaagacaaatatgatgatagatagagaagttgtcaatggtttgaggaa 27302816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 420
Target Start/End: Complemental strand, 34864439 - 34864368
Alignment:
Q  348 tttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    |||||||||||||| ||||| ||||||||| ||||||||| | ||| |||| |||||||||||||||||||||    
T  34864439 tttttagtactttt-ctttgtatttgaagacaaataagataaaagttagaggagttgtcaatggtttgaggaa 34864368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 428
Target Start/End: Original strand, 4953626 - 4953728
Alignment:
Q  326 atcatatgacattttgactatat-ttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatata 424  Q
    ||||||||||||| ||| ||| | |||||||| |||||||||| ||||||||| |||||||||| |||  | || |||||| |||||||||||||| |||    
T  4953626 atcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagataaaggagttgttaatggtttgaggaacata 4953724  T
Q  425 ttgt 428  Q
    ||||    
T  4953725 ttgt 4953728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 428
Target Start/End: Complemental strand, 12111505 - 12111401
Alignment:
Q  322 gagcatcatatgacattttgact-atatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    |||||||||||||||||||   | || ||||||||||||||  |||||||||||||| ||| ||||||||| | |||| |||||||||||||||||||||    
T  12111505 gagcatcatatgacattttttgttatgtttttagtactttta-tttgcatttgaagacaaa-aagatgagaat-agaggagttgtcaatggtttgaggaa 12111409  T
Q  421 tatattgt 428  Q
     |||||||    
T  12111408 catattgt 12111401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 428
Target Start/End: Original strand, 18897934 - 18898037
Alignment:
Q  325 catcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatat 423  Q
    |||||||||||||||| | || | |||||| ||||||| ||||||||||||||| ||||||| ||||||  |||  | ||||||||||||| ||||| ||    
T  18897934 catcatatgacatttttggctgtgtttttactactttt-ctttgcatttgaagacaaataagttgagagatagatgatttgtcaatggtttaaggaacat 18898032  T
Q  424 attgt 428  Q
    |||||    
T  18898033 attgt 18898037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 420
Target Start/End: Complemental strand, 25050224 - 25050142
Alignment:
Q  337 ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    ||||| |||| ||||||||| ||||| |||| ||||||||| ||||||||||| ||| |||||| || |||| |||||||||||    
T  25050224 ttttggctatgtttttagta-tttttatttgtatttgaagacaaataagatgaaagttagagaaattatcaacggtttgaggaa 25050142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 414
Target Start/End: Complemental strand, 1696741 - 1696652
Alignment:
Q  323 agcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggttt 414  Q
    |||||||||||||||||| | ||||||||  |||||||||  ||| |||||||||| ||||||||||||||  | || |||||||||||||||    
T  1696741 agcatcatatgacatttttggctatattt--agtactttta-tttacatttgaagacaaataagatgagagatataggagttgtcaatggttt 1696652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 392
Target Start/End: Original strand, 15192143 - 15192213
Alignment:
Q  322 gagcatcatatgacattttgact-atatttttagtactttttctttgcatttgaagaaaaataagatgagag 392  Q
    |||||||||||||||||||   | || ||||| |||||||| ||||||||||||||| ||||||||||||||    
T  15192143 gagcatcatatgacattttttgttatgtttttcgtactttt-ctttgcatttgaagacaaataagatgagag 15192213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 420
Target Start/End: Complemental strand, 31860039 - 31859957
Alignment:
Q  337 ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    ||||| |||| ||||||||  ||||| ||||||||||||||||||||| | |  | | ||||||||||||||| ||||||||||    
T  31860039 ttttggctatgtttttagttattttt-tttgcatttgaagaaaaataaaaggttatttagagaagttgtcaattgtttgaggaa 31859957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 428
Target Start/End: Original strand, 46647173 - 46647242
Alignment:
Q  359 ttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgt 428  Q
    ||||||||| |||||||| |||||||||  | | | |||||||||||||||||||| | |||||| ||||    
T  46647173 ttttctttgtatttgaaggaaaataagagaaaatttagagaagttgtcaatggtttcaagaatattttgt 46647242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 323 - 420
Target Start/End: Complemental strand, 22067980 - 22067883
Alignment:
Q  323 agcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    ||||||||||||||||||| |||| ||||||||| ||||| |||||||||||||| ||||||||||||||| | || |||||||||||||||||||||    
T  22067980 agcatcatatgacattttggctatgtttttagtaatttttatttgcatttgaagacaaataagatgagagttaaaggagttgtcaatggtttgaggaa 22067883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 312 - 428
Target Start/End: Original strand, 315115 - 315231
Alignment:
Q  312 attgatggttgagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatgg 411  Q
    ||||||| | ||| ||||||||| ||||||||||| ||||  ||||||||||||   ||||||||||||||||||||||||| |||| ||||||||||||    
T  315115 attgatgatagagtatcatatgatattttgactatgttttcggtactttttcttaatatttgaagaaaaataagatgagagttagaggagttgtcaatgg 315214  T
Q  412 tttgaggaatatattgt 428  Q
    ||||| |||||||||||    
T  315215 tttgaagaatatattgt 315231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 322 - 428
Target Start/End: Original strand, 29544459 - 29544565
Alignment:
Q  322 gagcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    ||||||||||||| ||||| | |||| |||||| || |||| ||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||||    
T  29544459 gagcatcatatgatatttttggctatgtttttattaatttt-ctttgcatttgaagacaaataagatgagagttagaggagttgtcaatagtttgaggaa 29544557  T
Q  421 tatattgt 428  Q
     |||||||    
T  29544558 catattgt 29544565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 322 - 428
Target Start/End: Original strand, 20446179 - 20446285
Alignment:
Q  322 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 421  Q
    ||||| ||||||| |||||  |||| |||||| ||||||||||||||||||||||| || |||||||||| | |||| ||||||||||||||| || ||     
T  20446179 gagcaacatatgatattttagctatgtttttaatactttttctttgcatttgaagacaattaagatgagaattagaggagttgtcaatggtttcagaaac 20446278  T
Q  422 atattgt 428  Q
    |||||||    
T  20446279 atattgt 20446285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 326 - 428
Target Start/End: Original strand, 7815267 - 7815369
Alignment:
Q  326 atcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatat 425  Q
    ||||||||| ||||||  ||| |||||||||||||||  ||||||||||||| ||||||||||||||| | || | ||||||||||||| || || ||||    
T  7815267 atcatatgatattttggttatgtttttagtacttttttgttgcatttgaagataaataagatgagagttaaaggacttgtcaatggtttaagaaacatat 7815366  T
Q  426 tgt 428  Q
    |||    
T  7815367 tgt 7815369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 410
Target Start/End: Original strand, 21471737 - 21471825
Alignment:
Q  322 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatg 410  Q
    |||||||||||| |||||||  ||| |||||||||||||||| ||||||||||||| ||||||||||| | | |||| | |||||||||    
T  21471737 gagcatcatatgccattttggttatgtttttagtactttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatg 21471825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 326 - 377
Target Start/End: Original strand, 4092616 - 4092667
Alignment:
Q  326 atcatatgacattttgactatatttttagtactttttctttgcatttgaaga 377  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  4092616 atcatatgacatttttgctatatttttagtactttttctttgcatttgaaga 4092667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 428
Target Start/End: Original strand, 23124841 - 23124946
Alignment:
Q  322 gagcatcatatgacattttg-actatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    ||||||||| |||||||||  ||||| |||||||||||||  |||| |||||||||| ||||||||||||| | |||| |||||| | |||| |||||||    
T  23124841 gagcatcatctgacattttttactatgtttttagtacttt--ctttacatttgaagacaaataagatgagatttagaggagttgttagtggtctgaggaa 23124938  T
Q  421 tatattgt 428  Q
     |||||||    
T  23124939 catattgt 23124946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 370 - 428
Target Start/End: Complemental strand, 1255340 - 1255282
Alignment:
Q  370 tttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgt 428  Q
    |||||||| ||||||| ||||||| |||| ||||||||||||||||||||||| |||||    
T  1255340 tttgaagacaaataagttgagagttagaggagttgtcaatggtttgaggaataaattgt 1255282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 428
Target Start/End: Original strand, 9066073 - 9066178
Alignment:
Q  323 agcatcatatgacattttg-actatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 421  Q
    ||||| ||||||||||||  ||||||||| ||||||||||  || | ||||||||| ||||||| ||| ||  |||||||||||||||| ||| |||||     
T  9066073 agcattatatgacattttttactatatttatagtacttttg-ttagaatttgaagacaaataagttgatagatagagaagttgtcaatgtttttaggaac 9066171  T
Q  422 atattgt 428  Q
    |||||||    
T  9066172 atattgt 9066178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 426
Target Start/End: Original strand, 7142038 - 7142142
Alignment:
Q  322 gagcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    ||||||||||||||||||| | |||| |||||| || |||| |||||||||| |||| ||||||| ||||||  | |  ||||||||||||||| |||||    
T  7142038 gagcatcatatgacatttttggctatgtttttaatagtttt-ctttgcatttaaagacaaataagttgagagagatatgagttgtcaatggtttaaggaa 7142136  T
Q  421 tatatt 426  Q
     |||||    
T  7142137 catatt 7142142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 420
Target Start/End: Original strand, 18496505 - 18496603
Alignment:
Q  322 gagcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    ||||| ||||||| ||||| | |||| ||||||||| |||| |||||||||||||| |||| ||| ||  | | ||||||||||||||| ||||||||||    
T  18496505 gagcaccatatgatattttaggctatgtttttagtagtttt-ctttgcatttgaaggaaaacaagttgcaatttagagaagttgtcaattgtttgaggaa 18496603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 426
Target Start/End: Complemental strand, 20470935 - 20470881
Alignment:
Q  372 tgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatatt 426  Q
    |||||| ||||||||||| | | |||| ||||||||||||||||||||| |||||    
T  20470935 tgaagacaaataagatgataattagaggagttgtcaatggtttgaggaacatatt 20470881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 428
Target Start/End: Complemental strand, 2632581 - 2632505
Alignment:
Q  352 tagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgt 428  Q
    ||||||||||||||||||||| ||||  ||||  |||||||| |||| ||||||  ||| ||| ||||| |||||||    
T  2632581 tagtactttttctttgcatttaaagactaatagtatgagagttagaggagttgttgatgattttaggaacatattgt 2632505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 322 - 426
Target Start/End: Complemental strand, 12340187 - 12340085
Alignment:
Q  322 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 421  Q
    |||||||||||||||||||| |||| |||||||||  ||||||||||||||||||| ||||||| ||||||| |||| |||||||||||||||||||||     
T  12340187 gagcatcatatgacattttggctatgtttttagta--ttttctttgcatttgaagacaaataaggtgagagttagaggagttgtcaatggtttgaggaac 12340090  T
Q  422 atatt 426  Q
    |||||    
T  12340089 atatt 12340085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 321 - 428
Target Start/End: Complemental strand, 17382211 - 17382104
Alignment:
Q  321 tgagcatcatatgacattttga-ctatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgagga 419  Q
    |||||||||||||| |||||   |||| | ||||||||||||| |||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||    
T  17382211 tgagcatcatatgatattttttgctatgtgtttagtacttttt-tttgcatttgaagacaaataagatgagagttagaggagttgtcaatggtttgagga 17382113  T
Q  420 atatattgt 428  Q
    | |||||||    
T  17382112 acatattgt 17382104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 15205572 - 15205689
Alignment:
Q  309 atcattgatggttgagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaa 408  Q
    ||||||||||   ||||||||||||| ||||||||||| ||||||||| ||||| ||||||||| || | |||||||||  |||| | || ||||||||     
T  15205572 atcattgatgacagagcatcatatgatattttgactatgtttttagtattttttatttgcatttaaatacaaataagat--gagttaaaggagttgtcag 15205669  T
Q  409 tggtttgaggaatatattgt 428  Q
    |||||||||||| |||||||    
T  15205670 tggtttgaggaacatattgt 15205689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 336 - 428
Target Start/End: Original strand, 16634000 - 16634092
Alignment:
Q  336 attttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgt 428  Q
    ||||||||||| ||||||||||||||| ||| | ||| ||||||||||||||||||||  ||  |||||||||||||||||| || |||||||    
T  16634000 attttgactatgtttttagtactttttttttacgtttaaagaaaaataagatgagagttggatgagttgtcaatggtttgagaaacatattgt 16634092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 337 - 428
Target Start/End: Complemental strand, 25594851 - 25594761
Alignment:
Q  337 ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgt 428  Q
    ||||| |||| ||||||||||||||  |||||||||||||| ||||||||||||||| |||| | || |||||||||||||||| |||||||    
T  25594851 ttttggctatgtttttagtactttta-tttgcatttgaagacaaataagatgagagttagaggatttctcaatggtttgaggaacatattgt 25594761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 322 - 427
Target Start/End: Original strand, 17027467 - 17027572
Alignment:
Q  322 gagcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    ||||||||||||||||||| | |||| |||||||||||||| |||||||||| |||| || |||||||||||| ||||  || ||||| |||||||||||    
T  17027467 gagcatcatatgacatttttggctatgtttttagtactttt-ctttgcatttaaagacaattaagatgagagttagaggcgtggtcaagggtttgaggaa 17027565  T
Q  421 tatattg 427  Q
     ||||||    
T  17027566 catattg 17027572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 363 - 428
Target Start/End: Original strand, 24517335 - 24517400
Alignment:
Q  363 ctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgt 428  Q
    ||||||||||||||| ||||||||||||| | |||| ||||||||||||||||||||| |||||||    
T  24517335 ctttgcatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaacatattgt 24517400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 336 - 420
Target Start/End: Original strand, 30072133 - 30072216
Alignment:
Q  336 attttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    |||||| |||| |||| ||||||||| ||||| ||||||||| ||||||||||||| | |||| |||||||||||||||||||||    
T  30072133 attttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaa 30072216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 322 - 428
Target Start/End: Original strand, 24841693 - 24841799
Alignment:
Q  322 gagcatcatatgacattttga-ctatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    |||||||||||||||||||   |||| ||||||||||| || ||||||||||||||| ||||||| | ||||  |||| |||| ||||||||||||||||    
T  24841693 gagcatcatatgacattttttgctatgtttttagtactatt-ctttgcatttgaagacaaataagtttagagatagaggagttttcaatggtttgaggaa 24841791  T
Q  421 tatattgt 428  Q
     |||||||    
T  24841792 catattgt 24841799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 428
Target Start/End: Original strand, 18222455 - 18222539
Alignment:
Q  343 ctatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgt 428  Q
    |||||||||||||| ||||| |||  ||||||||| ||||||||||||||| |||  |||||||||||||||||| || |||||||    
T  18222455 ctatatttttagta-tttttatttctatttgaagacaaataagatgagagttagatgagttgtcaatggtttgagaaacatattgt 18222539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 392
Target Start/End: Original strand, 22229749 - 22229819
Alignment:
Q  322 gagcatcatatgacattttgactatattttt-agtactttttctttgcatttgaagaaaaataagatgagag 392  Q
    |||||||||||| ||||||| |||| ||||| ||||||||| ||||||||||||||| ||||||||||||||    
T  22229749 gagcatcatatgtcattttggctatgttttttagtactttt-ctttgcatttgaagacaaataagatgagag 22229819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 406
Target Start/End: Complemental strand, 25075408 - 25075328
Alignment:
Q  325 catcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtc 406  Q
    |||||||| |||||||| |||| ||||||||| |||| ||||||| ||||||| |||||| || ||||| |||| |||||||    
T  25075408 catcatattacattttggctatgtttttagtaatttt-ctttgcacttgaagacaaataatattagagttagaggagttgtc 25075328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 406
Target Start/End: Complemental strand, 25133377 - 25133297
Alignment:
Q  325 catcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtc 406  Q
    |||||||| |||||||| |||| ||||||||| |||| ||||||| ||||||| |||||| || ||||| |||| |||||||    
T  25133377 catcatattacattttggctatgtttttagtaatttt-ctttgcacttgaagacaaataatattagagttagaggagttgtc 25133297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 11274479 - 11274411
Alignment:
Q  348 tttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgag 417  Q
    |||||||||||||| |||||||||| ||||  |||||||| ||||  |||  ||||||||||||||||||    
T  11274479 tttttagtactttt-ctttgcatttaaagaccaataagataagagatagatcagttgtcaatggtttgag 11274411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 420
Target Start/End: Complemental strand, 23157926 - 23157865
Alignment:
Q  359 ttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    |||||||||||||||||| ||||| ||| |  | | |||| |||||||||||||||||||||    
T  23157926 ttttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcaatggtttgaggaa 23157865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 428
Target Start/End: Complemental strand, 26330206 - 26330137
Alignment:
Q  359 ttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgt 428  Q
    |||||||||||||  |||| ||||||| ||||||   ||| ||||||||||||| | |||||||||||||    
T  26330206 ttttctttgcattgtaagacaaataagttgagagatggagtagttgtcaatggtctaaggaatatattgt 26330137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 391
Target Start/End: Original strand, 22754898 - 22754957
Alignment:
Q  331 atgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgaga 391  Q
    |||||||||||  ||| |||||||||| ||| |||||||||| |||| |||||||||||||    
T  22754898 atgacattttggatatgtttttagtacgttt-ctttgcatttaaagacaaataagatgaga 22754957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 325 - 420
Target Start/End: Original strand, 15574868 - 15574962
Alignment:
Q  325 catcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    ||||||||||||||||| |||| || ||||||||||||||||||||||||||| ||||||||||||| | |||| | |||||||| ||||||||||    
T  15574868 catcatatgacattttggctatcttgttagtactttttctttgcatttgaagacaaataagatgagatttagaggaattgtcaat-gtttgaggaa 15574962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 326 - 427
Target Start/End: Complemental strand, 13759622 - 13759521
Alignment:
Q  326 atcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatat 425  Q
    |||||||||  |||||| | | |||||| |||||||| |||| ||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||    
T  13759622 atcatatgatcttttgattgtgtttttaatactttttatttgtatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaacatat 13759523  T
Q  426 tg 427  Q
    ||    
T  13759522 tg 13759521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 325 - 428
Target Start/End: Original strand, 15998454 - 15998557
Alignment:
Q  325 catcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatata 424  Q
    ||||||||||||||||| |||| ||||| |||| |||||||||||||||||| ||||| | |||||||| |||| |||  || ||||||||||||| |||    
T  15998454 catcatatgacattttggctatgttttttgtacgttttctttgcatttgaaggaaaatgatatgagagttagaggagtgttccatggtttgaggaaaata 15998553  T
Q  425 ttgt 428  Q
    ||||    
T  15998554 ttgt 15998557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 322 - 416
Target Start/End: Original strand, 30355266 - 30355360
Alignment:
Q  322 gagcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttga 416  Q
    ||||||||||||| ||||| | |||| |||||||||||||| ||| ||||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  30355266 gagcatcatatgatatttttggctatgtttttagtacttttactt-gcatttgaaggtaaataagatgagagttagagaagttgtcaatggtttga 30355360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 420
Target Start/End: Complemental strand, 14924555 - 14924494
Alignment:
Q  359 ttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    ||||||||||||||||||  |||||| |||  | | |||| |||||||||||||||||||||    
T  14924555 ttttctttgcatttgaaggcaaataatatgtaatttagaggagttgtcaatggtttgaggaa 14924494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 405
Target Start/End: Complemental strand, 15576337 - 15576254
Alignment:
Q  322 gagcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgt 405  Q
    ||||||||||||| ||||| | |||| |||||||||| ||||||||| |||| |||| ||||| ||||||| | |||| ||||||    
T  15576337 gagcatcatatgatatttttggctatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagaggagttgt 15576254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 322 - 428
Target Start/End: Original strand, 446945 - 447051
Alignment:
Q  322 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 421  Q
    ||||||||||||| |||||  |||| |||||||||||||| |||| |||||||||| |||||||||||||||| ||| | ||||  ||| ||| |||||     
T  446945 gagcatcatatgatatttttgctatgtttttagtacttttcctttacatttgaagacaaataagatgagagtctgaggaattgttgatgattttaggaac 447044  T
Q  422 atattgt 428  Q
    |||||||    
T  447045 atattgt 447051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 420
Target Start/End: Original strand, 6137 - 6234
Alignment:
Q  323 agcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 420  Q
    ||||||||||| |||||| | |||| |||||||||||||| |||| ||||| || | ||||||||||||||| | |  |||| ||||||||||||||||    
T  6137 agcatcatatggcatttttggctatgtttttagtactttt-ctttccatttaaacacaaataagatgagagttatatgagttttcaatggtttgaggaa 6234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 387
Target Start/End: Original strand, 21337 - 21402
Alignment:
Q  322 gagcatcatatgacattttg-actatatttttagtactttttctttgcatttgaagaaaaataagat 387  Q
    ||||||||||||| |||||  | ||| ||||||||  ||||||||||||||||||||||||||||||    
T  21337 gagcatcatatgatattttttattatgtttttagtg-tttttctttgcatttgaagaaaaataagat 21402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 428
Target Start/End: Complemental strand, 8857 - 8778
Alignment:
Q  348 tttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgt 428  Q
    ||||||||||||||  ||| ||||| ||||||||||||||||| || |||| | |||||||||||| ||||| | ||||||    
T  8857 tttttagtacttttatttt-cattttaagaaaaataagatgagggttagaggatttgtcaatggttagaggattgtattgt 8778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 428
Target Start/End: Complemental strand, 13219 - 13140
Alignment:
Q  348 tttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgt 428  Q
    ||||||||||||||  ||| ||| | |||| ||||||||||||||| |||| | || ||||||||||| ||| ||||||||    
T  13219 tttttagtacttttatttt-catattaagacaaataagatgagagttagaggatttttcaatggtttgtggattatattgt 13140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 27128 - 27064
Alignment:
Q  323 agcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagat 387  Q
    ||||||| |||| ||||| | |||| |||||||||||||| ||||||||||||||| |||||||||    
T  27128 agcatcacatgatattttcggctatgtttttagtactttt-ctttgcatttgaagataaataagat 27064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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