View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689-Insertion-8 (Length: 200)
Name: NF5689-Insertion-8
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689-Insertion-8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 42235704 - 42235909
Alignment:
| Q |
7 |
actttttaccatagaagaaaaaagaaaactcattcttcaatttccactctcaca------------acaaatttactaccacagtaccactccattccaa |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42235704 |
actttttaccatagaagaaaaaagaaaactcattcttcaatttccactctcacaagccacaacacaacaaatttactaccacagtaccactccattccaa |
42235803 |
T |
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| Q |
95 |
tttccattcctcaaaacaaaacaaatctcactcactctcccttttcacttctcaaaacaacttcaacaatcataaaataagcacattctcacacacaaca |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42235804 |
tttccattcctcaaaacaaaacaaatctcactcactctcccttttcacttctcaaaacaacttcaacaatcataaaataagcacattctcacacacaaca |
42235903 |
T |
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| Q |
195 |
caagca |
200 |
Q |
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|||||| |
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| T |
42235904 |
caagca |
42235909 |
T |
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