View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5689_high_1 (Length: 607)
Name: NF5689_high_1
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_high_1 |
 | |
|
| [»] scaffold0020 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 496; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 11 - 590
Target Start/End: Complemental strand, 51458467 - 51457885
Alignment:
| Q |
11 |
catcatcattagtgtcaaagagttggtgaaacatatcaaccgcctccccatcatcatgtagctccctcttatcttgctcaaggtgcttacgcgtcaattt |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51458467 |
catcatcattagtgtcagagagttggtgaaacatatcaaccgcctccccatcaccatgtagctccctcttatcttgctcaaggtgcttacgcgtcaattt |
51458368 |
T |
|
| Q |
111 |
cttaatgacactaatttcctcaggttttagttccactttagcgatatgagtcaacacatttaccttatagccaaattacnnnnnnnntaa---taaacat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
51458367 |
cttaatgacactaatttcctcaggttttagttccactttagcgatatgagtcaacacatttaccttatagccaaattacaaaaaaaaaaaaaataaacat |
51458268 |
T |
|
| Q |
208 |
ttaattttcctcataataaaatattcacttggagnnnnnnntcaatagttataaagtgctaacaaagaattgatcaggaaatgcatcattcattattcaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51458267 |
ttaattttcctcataataaaatattcacttggagaaaaaaatcaatagttataaagtgctaacaaagaattgatcaggaaatgcatcattcattattcaa |
51458168 |
T |
|
| Q |
308 |
gtcctaaaaatactttgcagtttatgccactggtcataaaaagaatacttttttgagtcattattaccaaaatcccaagagaaataacaaatcaaatgaa |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
51458167 |
gtcctaaaaatactttgcagtttatgccacttgtcataaaaagaatacttttttgagtcattattaccaaaatcccaagagaaataacaaatcaaatgga |
51458068 |
T |
|
| Q |
408 |
taaattatctatgacagtgcaatgaacaaagaattatgacatatacttgaagctgcacaacaatcagctcgtaagaaaataaacagataaatgaaatggc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51458067 |
taaattatctatgacagtgcaatgaacaaagaattatgacatatacttgaagctgcacaacaatcagctcgtaagaaaataaacagataaatgaaatggc |
51457968 |
T |
|
| Q |
508 |
ttacaaaacaaaaatgcacatgtcctacaaattatgcactttttatcctatactcgattcataacaacaataaaacctttcgt |
590 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51457967 |
ttccaaaacaaaaatgcacatgtcccacaaattatgcactttttatcctatactcgattcataacaacaataaaacctttcgt |
51457885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 51482950 - 51482835
Alignment:
| Q |
60 |
atcatcatgtagctccctcttatcttgctcaaggtgcttacgcgtcaatttcttaatgacactaatttcctcaggttttagttccactttagcgatatga |
159 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||| | |||| ||||| |||| || ||| |||||| ||| | || ||||| ||| |||||| |
|
|
| T |
51482950 |
atcaccatgtagctccctcttgtcttgctcaaggtgcttttgtgtcagtttctcaatggcagcaatgccctcagatttcaatttcacttcagcaatatga |
51482851 |
T |
|
| Q |
160 |
gtcaacacatttacct |
175 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
51482850 |
gtcaacacatttacct |
51482835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 51499790 - 51499733
Alignment:
| Q |
60 |
atcatcatgtagctccctcttatcttgctcaaggtgcttacgcgtcaatttcttaatg |
117 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
51499790 |
atcaccatgtagctccctcttgtcttgctcaaggtgcttttctgtcaatttcttaatg |
51499733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 9e-47; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 43162733 - 43162513
Alignment:
| Q |
15 |
atcattagtgtcaaagagttggtgaaacatatcaaccgcctccccatcatcatgtagctccctcttatcttgctcaaggtgcttacgcgtcaatttctta |
114 |
Q |
| |
|
|||||||||||| || || | ||||| || |||||| |||| | |||| ||| || |||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
43162733 |
atcattagtgtcggagtgtcgatgaaatatttcaaccacctctcgatcaccataaaggtccctcttatcttgctcaaggtgcttctgtctcaatttctta |
43162634 |
T |
|
| Q |
115 |
atgacactaatttcctcaggttttagttccactttagcgatatgagtcaacacatttaccttatagccaaattacnnnnnnnntaataaacatttaattt |
214 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| | ||||||||||||| |
|
|
| T |
43162633 |
atgacattaatttcctcaggtttcagttccactttagcgatatgcgtcaacacatttaccttatagtcaaattacaaaaaaaaga--aaacatttaattt |
43162536 |
T |
|
| Q |
215 |
tcctcataataaaatattcactt |
237 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
43162535 |
tcctcataataaaatattcactt |
43162513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 293 - 552
Target Start/End: Complemental strand, 43162497 - 43162247
Alignment:
| Q |
293 |
tcattcattattcaagtcctaaaaatactttgcagtttatgccactggtcataaaaagaatacttttttgagtcatta-ttaccaaaatcccaagagaaa |
391 |
Q |
| |
|
|||||| ||||||| ||| ||| ||||||||| |||||||| |||| ||| |||||||||| |||||| || |||||| ||||||||| ||| |
|
|
| T |
43162497 |
tcattcgttattcatgtcgtaagaatactttgaagtttatgtcactagtcgtaaaaagaattctttttcgaatcattaattaccaaaacacca------- |
43162405 |
T |
|
| Q |
392 |
taacaaatcaaatgaataaattatctatgacagtgcaatgaacaaagaattatgacatatacttgaagctgcacaacaatcagctcgtaagaaaataaac |
491 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||| ||||| ||||||||| | |||||||| || ||||||| ||||||| ||||||||| ||| |
|
|
| T |
43162404 |
---caaatcaaattatgaaattatctatgacagtgcaatggacaaaaaattatgacttgtacttgaaactacacaacattcagctcctaagaaaatgaac |
43162308 |
T |
|
| Q |
492 |
agataaatgaaatggcttacaaaacaaaaatgcacatgtcctacaaattatgcacttttta |
552 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||| |||||||| |||||||| |
|
|
| T |
43162307 |
agataaatgcaatggcttacaaaacaaaaacacacatgtcctgtaaattatgtacttttta |
43162247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 175
Target Start/End: Original strand, 20867027 - 20867142
Alignment:
| Q |
60 |
atcatcatgtagctccctcttatcttgctcaaggtgcttacgcgtcaatttcttaatgacactaatttcctcaggttttagttccactttagcgatatga |
159 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||| || ||||| ||||| || |||| | ||| || |||||||||||||| | |||| |
|
|
| T |
20867027 |
atcaccatgtagctccctcttgtcttgctcaaggtgcttttctgttaattttttaattgcagtaatgctcacagtttccagttccactttagcaacatga |
20867126 |
T |
|
| Q |
160 |
gtcaacacatttacct |
175 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
20867127 |
gtcaacacatttacct |
20867142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 27398476 - 27398420
Alignment:
| Q |
60 |
atcatcatgtagctccctcttatcttgctcaaggtgcttacgcgtcaatttcttaat |
116 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||| | ||||||||||||| |
|
|
| T |
27398476 |
atcaccatgtagctccctcttgtcttgctcaaggtgcttttgtttcaatttcttaat |
27398420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 175
Target Start/End: Original strand, 135782 - 135888
Alignment:
| Q |
68 |
gtagctccctcttatcttgctcaaggtgcttacgcgtcaatttcttaatgacactaatttcctcaggttttagttccactttagcgatatgagtcaacac |
167 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | |||||||||||||| || |||| ||||| || |||||||| ||||| |||||||||||||| |
|
|
| T |
135782 |
gtagctccctcttgtcttgctcaaggtgcttttgtgtcaatttcttaattgcagtaatactctcagtttccagttccac-ttagcaatatgagtcaacac |
135880 |
T |
|
| Q |
168 |
atttacct |
175 |
Q |
| |
|
|||||||| |
|
|
| T |
135881 |
atttacct |
135888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 36549861 - 36549804
Alignment:
| Q |
60 |
atcatcatgtagctccctcttatcttgctcaaggtgcttacgcgtcaatttcttaatg |
117 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
36549861 |
atcaccatgtagcaccctcttatcttgctcaaggtgcttttgtatcaatttcttaatg |
36549804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University