View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_high_10 (Length: 496)
Name: NF5689_high_10
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_high_10 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 142495 - 142976
Alignment:
| Q |
1 |
atgcattttggaaacgtttatctaataaacaaactttagctttggtacaatataaagcttttcttgaagaaaaccgagaaaatatttgtaattgttattc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
142495 |
atgcattttggaaacgtttatctaataaacaaactttagctttggtacaatataaagcttttcttgaagaaaaccgaaaaaatatttgtaattgttattc |
142594 |
T |
|
| Q |
101 |
caaacaagaactttgtaaggatgagaagtttttggaaatgattttgttagactcagttttcataatggaacnnnnnnngagaaaagctaaagaatctgaa |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
142595 |
caaacaagaactttgtacggatgagaagtttttggaaatgattttgttagactcagttttcataatggaactttttttgagaaaagttaaagaatctgaa |
142694 |
T |
|
| Q |
201 |
caggaaaatgatttcatgtttaaaacatcatggatttacaaaatgacacagagagatttgttgctgcttgaaaatcaaattcctatgtttgttttggagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
142695 |
caggaaaatgatttcatgtttaaaacatcatggatttacaaaatgacacaaagagatttgttgctgcttgaaaatcaaattcccatgtttgttttggagg |
142794 |
T |
|
| Q |
301 |
aattacacagaggggtgttattagttgaaaataatggttgcaatagcaataaggaaaattgtgttagttttattgatcttgcttttaaatactttgaaga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
142795 |
aattacacagaggggtgttattagttgaaaataatggttgcaatagcaataaggaaaattgtgttagttttattgatcttgcttttaaatactttgaaga |
142894 |
T |
|
| Q |
401 |
ttattatcctcaaaagttaataagtcaaaaattggagttgactcaaaattgcaaatcttgcaaccatttcactgatttgatt |
482 |
Q |
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| T |
142895 |
ttattatcctcaaaagttaataagtcaaaaattggagttgactcaaaattgcaaatcttgcaaccatttcactgatttgatt |
142976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 107153 - 107055
Alignment:
| Q |
179 |
gagaaaagctaaagaatctgaacaggaaaatgatttcatgtttaaaacatcatggatttacaaaatgacacagagagatttgttgctgcttgaaaatca |
277 |
Q |
| |
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||||||| | || ||||||||| |||||| |||| |||||| | |||||||||||||||||| | ||| ||||||||||| || ||||||||||| |
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| T |
107153 |
gagaaaatcaaaggaatctgaaagggaaaaggattacatgttcacaacatcatggatttacaagggtatacaaagagatttgttactccttgaaaatca |
107055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 45961177 - 45960703
Alignment:
| Q |
1 |
atgcattttggaaacgtttatctaataaacaaactttagctttggtacaatataaagcttttcttgaagaaaaccgagaaaatatttgtaattgttattc |
100 |
Q |
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||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
45961177 |
atgcattttggaaacgtttgtcaaataaacaaactttagctttggtagaatataaagcttttcttgaagaaaatagagaaaatattggtaattgttattc |
45961078 |
T |
|
| Q |
101 |
caaacaagaactttgtaaggatgagaagtttttggaaatgattttgttagactcagttttcataatggaacnnnnnnngagaaaagctaaagaatctgaa |
200 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45961077 |
caaacaagaacttcgcaaggatgagaagtttttggaaatgattttgttagactcagttttcataatggagttgtttttgagaaaagctaaagaatctgaa |
45960978 |
T |
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| Q |
201 |
caggaaaatgatttcatgtttaaaacatcatggatttacaaaatgacacagagagatttgttgctgcttgaaaatcaaattcctatgtttgttttggagg |
300 |
Q |
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||| |||||||||||||||||| ||||| ||||| ||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45960977 |
cagaaaaatgatttcatgtttacaacat---ggatt-acaaaatcacacaaatagatttgttgctgcttgaaaatcaaattcctatgtttgttttggagg |
45960882 |
T |
|
| Q |
301 |
aattacacagaggggtgttattagttgaaaataatggttgcaatagcaataaggaaaattgtgttagttttattgatcttgcttttaaatactttgaaga |
400 |
Q |
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||||||||| | |||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
45960881 |
aattacacaaaagggtgttattaggtgaaaagaatggttgcaatagcaataaggaaaattgccttagttttattgatcttgcttttaactactttgaaga |
45960782 |
T |
|
| Q |
401 |
ttattatcctcaaaagttaataagtcaaaaattggagttgactcaaaattgcaaatcttgcaaccatttcactgatttgatt |
482 |
Q |
| |
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||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| || ||| ||||||||||| |
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| T |
45960781 |
ttattatcctcaaaagt---taagtaaaaaattggagttgactcaaaattgcaaatcttgcaaacacttcgctgatttgatt |
45960703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 165; Significance: 5e-88; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 225 - 482
Target Start/End: Original strand, 298107 - 298359
Alignment:
| Q |
225 |
acatcatggatttacaaaatgacacagagagatttgttgctgcttgaaaatcaaattcctatgtttgttttggaggaattacacagaggggtgttattag |
324 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||| | || ||||||||| |
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| T |
298107 |
acatcatggatttacaaaatcacacagaga--tttcttgctgcttgaaaatcaaattcttatgtttgttttggaggaattacacaaaaggctgttattag |
298204 |
T |
|
| Q |
325 |
ttgaaaataatggttgcaatagcaataaggaaaattgtgttagttttattgatcttgcttttaaatactttgaagattattatcctcaaaagttaataag |
424 |
Q |
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|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| |
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| T |
298205 |
gtgaaaagaatggtttcaatagcaataaggaaaattgtgttagttttattgatcttgcttttaactactttgaagtttattatcctcaaaagt---taag |
298301 |
T |
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| Q |
425 |
tcaaaaattggagttgactcaaaattgcaaatcttgcaaccatttcactgatttgatt |
482 |
Q |
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| |||| ||||||||||||| |||||||||||||||||| || |||| |||||||||| |
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| T |
298302 |
taaaaacttggagttgactccaaattgcaaatcttgcaaacacttcattgatttgatt |
298359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 25 - 230
Target Start/End: Original strand, 297724 - 297930
Alignment:
| Q |
25 |
ataaacaaactttagctttggtacaatataaagcttttcttgaagaaaaccgagaaaatatttgtaattgttattccaaacaagaactttgtaaggatga |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| |||||||| |
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| T |
297724 |
ataaacaaactttagctttggtacaatataaagcttttcttgaagaaaacagagaaaatattggtaatttttattccaaacaagaactttgcaaggatga |
297823 |
T |
|
| Q |
125 |
gaagtttttggaaatgattttgttagactcagttttcataatgga-acnnnnnnngagaaaagctaaagaatctgaacaggaaaatgatttcatgtttaa |
223 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
297824 |
gaagcttttggaaatgattttgttagactcagttttcataatggagttgttttttgagaaaagctaaagaatctgaacagaaagatgatttcatgtttac |
297923 |
T |
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| Q |
224 |
aacatca |
230 |
Q |
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||||||| |
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| T |
297924 |
aacatca |
297930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 39 - 169
Target Start/End: Complemental strand, 27123871 - 27123741
Alignment:
| Q |
39 |
gctttggtacaatataaagcttttcttgaagaaaaccgagaaaatatttgtaattgttattccaaacaagaactttgtaaggatgagaagtttttggaaa |
138 |
Q |
| |
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||||||| || |||||||||||| |||||| ||||| | |||||||| |||| ||||||||||| | |||| |||| | || || ||||| ||||| |
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| T |
27123871 |
gctttgggacgatataaagctttccttgaataaaacagtgaaaatataagtaactgttattccaagccagaagtttggatggtggatcagtttgtggaat |
27123772 |
T |
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| Q |
139 |
tgattttgttagactcagttttcataatgga |
169 |
Q |
| |
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||||||||||||||||||||||| ||||| |
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| T |
27123771 |
atattttgttagactcagttttcatcatgga |
27123741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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