View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_high_17 (Length: 434)
Name: NF5689_high_17
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 49 - 415
Target Start/End: Complemental strand, 40423721 - 40423354
Alignment:
| Q |
49 |
ttatgaaccatattgattatgcctccagtaattggatttttggttcttaattcttcactttctagatcttaggaacaaccccactttaacaacaacaaaa |
148 |
Q |
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| T |
40423721 |
ttatgaaccatattgattatgcctccagtaattggatttttggttcttaattcttcactttctagatcttaggaacaaccccactttaacaacaacaaaa |
40423622 |
T |
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| Q |
149 |
catccactacggtttcagttccctaatacagtttcttagatttttt-cataaatattgatcttttgttttgagagaaatgtgaacttgataacttgggac |
247 |
Q |
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| T |
40423621 |
catccactacggtttcagttccctaatacaatttcttagatttttttcataaatattgatcttttgttttgagagaaatgtgaacttgataacttggtac |
40423522 |
T |
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| Q |
248 |
tttttctaagagaaaatgaagaaacaattaacaggtttaaggggtgattcacacctgcactctgcaattcgagttggaaatttggaattggtattggaaa |
347 |
Q |
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| T |
40423521 |
tttttctaagagaaaatgaagaaacaattaacaggtttaaggggtgattcacacctgcactctgcaattcgagttggaaatttggaattggtattggaaa |
40423422 |
T |
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| Q |
348 |
tcatctctgaaaatcaaggggaagaattaaaggagttgttttcaaagcaaaataattcaagtgaaact |
415 |
Q |
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| T |
40423421 |
tcatctctgaaaatcaaggggaagaattaaaggagttgttttcaaagcaaaataattcaagtgaaact |
40423354 |
T |
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