View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_high_2 (Length: 594)
Name: NF5689_high_2
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 1 - 581
Target Start/End: Original strand, 234066 - 234646
Alignment:
| Q |
1 |
gtgaaatgcgacgtcatttgagaaaaccattatcaagggcttcaacgatggggatcaacttagggtgcgcccctgtgcagtaagctgcacaggacttcga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
234066 |
gtgaaatgcgacgtcatttgagaaaaccattatcaagggcttcaacgatggggatcaacttagggtgcgcccctgtgcagtaagccgcacaggacttcga |
234165 |
T |
|
| Q |
101 |
agacttgtgattaaattttgcagcacagtctcagcctaaacatgaaatcaaatatattcgaagactttccttgctcaatctcagcctgggcattacccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
234166 |
agacttgtgattaaattttgcagcacagtctcagcctaaacatgaaatcagatatattcgaagactttccttgctcaatctcagcctgggcattacccaa |
234265 |
T |
|
| Q |
201 |
tatcaagaacgcacctctggaatatttaaaaattaaaatatcaggcaaaaaattgttggaattcagaaccacaccagtgtaatgagaggttatgttgtgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
234266 |
tatcaagaacgcacctctggaatatttaaaaattaaaatatcaggcaaaaaattgttggaattcagaaccacaccagtgtaatgagaggttatgttgtgc |
234365 |
T |
|
| Q |
301 |
ctctaacaaagctataatccacagttcagcaataatggtacttcaagtcaagtcaatccttacattctagaagtcataggtgtttgtaaaaatcaatcaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
234366 |
ctctaacaaagctataatccacagttcagcaataatggtacttcaagtcaagtcaatccttacattctagaagtcataggtgtttgtaaaaatcaatcaa |
234465 |
T |
|
| Q |
401 |
ttttaaaaacttcatggnnnnnnntatttattaaaacctttagctgaactcaaaatgaataaatgcaagacttgttgaaatctatggtgatttggataaa |
500 |
Q |
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| T |
234466 |
ttttaaaaacttcatggaaaaaaatatttattaaaacctttagctgaactcaaaatgaataaatgcaagacttgttgaaatctatggtgatttggataaa |
234565 |
T |
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| Q |
501 |
gtgttgcacaccggtgtacccacgatttaatgttctaatatccaagcttcaaataaaatgaattagaatgatagtcaagta |
581 |
Q |
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| T |
234566 |
gtgttgcacaccggtgtacccacgatttaatgttctaatatccaagcttcaaataaaatgaattagaatgatagtcaagta |
234646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 3e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 198 - 581
Target Start/End: Complemental strand, 36419325 - 36418960
Alignment:
| Q |
198 |
caatatcaagaacgcacctctggaatatttaaaaattaaaatatcaggcaaaaaattgttggaattcagaaccacaccagtgtaatgagaggttatgttg |
297 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||| || ||||||||||||||| || |
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| T |
36419325 |
caatatcaagaatgcacctctggaatatttaaaaattaaaatatcaggtaagaaattgttggaattcagatccacaacaacgtaatgagaggttattctg |
36419226 |
T |
|
| Q |
298 |
tgcctctaacaaagctataatccacagttcagcaataatggtacttcaagtcaagtcaatccttacattctagaagtcataggtgtttgtaaaaatcaat |
397 |
Q |
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| T |
36419225 |
tgcctctaacaaagctaaaatccccagttcagcaataattgcccttcaagtcaag---------------------tcataggtgtttgtaaaaatcaat |
36419147 |
T |
|
| Q |
398 |
caattttaaaaacttcatggnnnnnnntat---ttattaaaacctttagctgaactcaaaatgaataaatgcaagacttgttgaaatctatggtgatttg |
494 |
Q |
| |
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||||| |||||||||||| | | || |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
36419146 |
caattctaaaaacttcattgaaaaaaaaaaatctttttaaaacctttagctgaactcagaatgaataaatgcaagacttgtcgaaatctatggtgatttg |
36419047 |
T |
|
| Q |
495 |
gataaagtgttgcacaccggtgtacccacgatttaatgttctaatatccaagcttcaaataaaatgaattagaatgatagtcaagta |
581 |
Q |
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|||||| ||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36419046 |
gataaaatgtcgcacaccagcgtacccacgatttaatgttctaatatccaagcttcaaataaaatgaattagaatgatagtcaagta |
36418960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 36419600 - 36419546
Alignment:
| Q |
142 |
atgaaatcaaatatattcgaagactttccttgctcaatctcagcctgggcattac |
196 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36419600 |
atgaaatcaaatatattcgaagactttccttgctcaatctcagcctgagcattac |
36419546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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