View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5689_high_23 (Length: 397)

Name: NF5689_high_23
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5689_high_23
NF5689_high_23
[»] chr2 (2 HSPs)
chr2 (65-317)||(34895846-34896098)
chr2 (197-276)||(24762738-24762818)
[»] chr4 (1 HSPs)
chr4 (18-101)||(4068293-4068376)
[»] chr8 (4 HSPs)
chr8 (25-131)||(12762690-12762795)
chr8 (19-102)||(17000251-17000334)
chr8 (18-77)||(31219233-31219291)
chr8 (18-131)||(13478497-13478610)
[»] chr7 (3 HSPs)
chr7 (18-108)||(38140372-38140462)
chr7 (18-101)||(6622256-6622339)
chr7 (51-96)||(36034250-36034295)
[»] chr3 (1 HSPs)
chr3 (29-126)||(50173323-50173420)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 65 - 317
Target Start/End: Original strand, 34895846 - 34896098
Alignment:
Q  65 caaaataaagtttacatttttagtttcttaacaaatgttccaaaagcatttgttagcatttcgcttttttaaaggcaaatgtttaattatcttcaagcac 164  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  34895846 caaaataaagtttacacttttagtttcttaacaaatgtcccaaaagcatttgttagcaattcgcttttttaaaggcaaatgtttaattatcttcgagcac 34895945  T
Q  165 tttttaagaatttttaatggtaagnnnnnnnnataaaaatatttgtattcaatatatcagaatttgtaatatttgatttttaaatgaataaattttaaat 264  Q
    |||||||||| ||||||||||||         |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  34895946 tttttaagaacttttaatggtaatttttttttataaaaatatgtgtattcaatgtatcagaatttgtaatatttgatttttaaatgaataatttttaaat 34896045  T
Q  265 ttgggattcttagagtttcccatgggcattgtaacaacctgtttttagttaga 317  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  34896046 ttgggattcttagagtttcctatgggcattgtaacaacccgtttttagttaga 34896098  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 276
Target Start/End: Original strand, 24762738 - 24762818
Alignment:
Q  197 ataaaaatatttgtattcaatatatcagaatttgtaatatttga-tttttaaatgaataaattttaaatttgggattctta 276  Q
    |||||||||| | || |||||||||  ||||||||||||||||| ||||| || |||||  || |||||||||||| ||||    
T  24762738 ataaaaatatgtataatcaatatattggaatttgtaatatttgacttttttaaggaatattttctaaatttgggatcctta 24762818  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 4068376 - 4068293
Alignment:
Q  18 agaaaatgttactttttagtattttaataagccaaatacataattttcaaaataaagtttacatttttagtttcttaacaaatg 101  Q
    |||||| |||||||||| |||||| |||||| |||||||| ||||| ||  |||||||||  | ||||||||||||||||||||    
T  4068376 agaaaaagttactttttggtatttcaataagtcaaatacacaatttccatgataaagtttctacttttagtttcttaacaaatg 4068293  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 12762690 - 12762795
Alignment:
Q  25 gttactttttagtattttaataagccaaatacataattttcaaaataaagtttacatttttagtttcttaacaaatgttccaaaag-catttgttagcat 123  Q
    |||||||||| |||||| |||||| |||||| | ||||||||| ||||| |||  ||||||| ||||| ||||||||  || |||| |||||||||||||    
T  12762690 gttactttttggtatttcaataagtcaaatatacaattttcaatataaaatttttatttttaatttctaaacaaatg--cctaaagacatttgttagcat 12762787  T
Q  124 ttcgcttt 131  Q
    ||| ||||    
T  12762788 ttctcttt 12762795  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 17000251 - 17000334
Alignment:
Q  19 gaaaatgttactttttagtattttaataagccaaatacataattttcaaaataaagtttacatttttagtttcttaacaaatgt 102  Q
    ||||| |||||||||||| |||| |||||| || ||||| || ||  || ||||| |||  |||||||||||||||||||||||    
T  17000251 gaaaaagttactttttagcatttcaataagtcagatacacaagttctaacataaaatttttatttttagtttcttaacaaatgt 17000334  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 31219233 - 31219291
Alignment:
Q  18 agaaaatgttactttttagtattttaataagccaaatacataattttcaaaataaagttt 77  Q
    |||||| ||||  ||||||||||| |||||| |||||||||||||||| |||||||||||    
T  31219233 agaaaaagttagattttagtatttcaataagtcaaatacataattttc-aaataaagttt 31219291  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 13478610 - 13478497
Alignment:
Q  18 agaaaatgttactttttagtattttaataagccaaatacataattttcaaaataaagtttacatttttagtttcttaacaaatgttccaaaagcatttgt 117  Q
    |||||| |||| |||||||||||| |||||   ||||||| ||||| ||  |||||||||  | ||||||||| ||||||||| |   |||  |||||||    
T  13478610 agaaaaagttaatttttagtatttcaataaatgaaatacacaatttacaggataaagtttttacttttagttttttaacaaatatcttaaagacatttgt 13478511  T
Q  118 tagcatttcgcttt 131  Q
    ||||||||| ||||    
T  13478510 tagcatttctcttt 13478497  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 38140372 - 38140462
Alignment:
Q  18 agaaaatgttactttttagtattttaataagccaaatacataattttcaaaataaagtttacatttttagtttcttaacaaatgttccaaa 108  Q
    |||||||||||||||||  ||||| |||||| |||||||| |||||| || ||||| |||  | ||||||||| | |||||||| ||||||    
T  38140372 agaaaatgttactttttgatatttcaataagtcaaatacacaatttttaatataaatttttgacttttagtttgtaaacaaatgctccaaa 38140462  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 6622339 - 6622256
Alignment:
Q  18 agaaaatgttactttttagtattttaataagccaaatacataattttcaaaataaagtttacatttttagtttcttaacaaatg 101  Q
    |||||| || |||||||| |||| ||| |||  ||||||| ||||||||||||||| |||  ||||| | ||||||||||||||    
T  6622339 agaaaaagtaactttttaatattctaacaagttaaatacacaattttcaaaataaaatttctattttaaatttcttaacaaatg 6622256  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 36034295 - 36034250
Alignment:
Q  51 aaatacataattttcaaaataaagtttacatttttagtttcttaac 96  Q
    |||||||||||||||||||  ||  |||||||||||||||||||||    
T  36034295 aaatacataattttcaaaaataaacttacatttttagtttcttaac 36034250  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 50173420 - 50173323
Alignment:
Q  29 ctttttagtattttaataagccaaatacataattttcaaaataaagtttacatttttagtttcttaacaaatgttccaaaagcatttgttagcatttc 126  Q
    |||||| |||||| |||||| |||||||| ||||| ||| |||||| ||  | ||||||||||||||| | ||  | ||| ||| |||||||||||||    
T  50173420 ctttttggtatttcaataagtcaaatacacaatttccaagataaagattctacttttagtttcttaactagtgccctaaaggcacttgttagcatttc 50173323  T

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