View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_high_24 (Length: 386)
Name: NF5689_high_24
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_high_24 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 10 - 370
Target Start/End: Original strand, 3392 - 3752
Alignment:
| Q |
10 |
ataatacttgtaggaacattccttctgtttttcaaaatgataagttatgccttatacttataccttgtctgagctgaaggaacaaaaagactcacattta |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3392 |
ataatacttgtaggaacattccttctgtttttcaaaatgataagttatgccttatacttataccttgtctgagctgaaggaacaaaaagactcacattta |
3491 |
T |
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| Q |
110 |
tttctttgtctaatcaacaaccgcaatttctgaaatatgaatcagaggaacaatatggttccatgacagaatccactatgactggaggagacttttctgc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3492 |
tttctttgtctaatcaacaaccgcaatttctgaaatatgaatcagaggaacaatatggttccatgacagaatccactatgactggaggagacttttctgc |
3591 |
T |
|
| Q |
210 |
tctcaggacattaaactggcactcaaacttcccacccaccattaattataacaccgtcagggtcagaaacaatgaaccaagtcggtcgatattgtaagta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592 |
tctcaggacattaaactggcactcaaacttcccacccaccattaattataacaccgtcagggtcagaaacaatgaaccaagtcggtcgatattgtaagta |
3691 |
T |
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| Q |
310 |
cacatccttctcatcaaaggtcattctgcattaaggagtcatctaaaaaatgttttttgtt |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3692 |
cacatccttctcatcaaaggtcattctgcattaaggagtcatctaaaaaatgttttttgtt |
3752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 10 - 370
Target Start/End: Original strand, 3392 - 3752
Alignment:
| Q |
10 |
ataatacttgtaggaacattccttctgtttttcaaaatgataagttatgccttatacttataccttgtctgagctgaaggaacaaaaagactcacattta |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3392 |
ataatacttgtaggaacattccttctgtttttcaaaatgataagttatgccttatacttataccttgtctgagctgaaggaacaaaaagactcacattta |
3491 |
T |
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| Q |
110 |
tttctttgtctaatcaacaaccgcaatttctgaaatatgaatcagaggaacaatatggttccatgacagaatccactatgactggaggagacttttctgc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3492 |
tttctttgtctaatcaacaaccgcaatttctgaaatatgaatcagaggaacaatatggttccatgacagaatccactatgactggaggagacttttctgc |
3591 |
T |
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| Q |
210 |
tctcaggacattaaactggcactcaaacttcccacccaccattaattataacaccgtcagggtcagaaacaatgaaccaagtcggtcgatattgtaagta |
309 |
Q |
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| T |
3592 |
tctcaggacattaaactggcactcaaacttcccacccaccattaattataacaccgtcagggtcagaaacaatgaaccaagtcggtcgatattgtaagta |
3691 |
T |
|
| Q |
310 |
cacatccttctcatcaaaggtcattctgcattaaggagtcatctaaaaaatgttttttgtt |
370 |
Q |
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| T |
3692 |
cacatccttctcatcaaaggtcattctgcattaaggagtcatctaaaaaatgttttttgtt |
3752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 10 - 368
Target Start/End: Complemental strand, 44371460 - 44371106
Alignment:
| Q |
10 |
ataatacttgtaggaacattccttctgtttttcaaaatgataagttatgccttatacttataccttgtctgagctgaaggaacaaaaagactcacattta |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44371460 |
ataatacttgtaggaacattccttctgtttttcaaaatgataagttatgccttatacttataccttgtcttagctgaaggaacaaaaagactcacattta |
44371361 |
T |
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| Q |
110 |
tttctttgtctaatcaacaaccgcaatttctgaaatatgaatcagaggaacaatatggttccatgacagaatccactatgactggaggagacttttctgc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44371360 |
tttctttgtctaatcaacaaccgcaatttctgaaatatgaatcagaggaacaatatggttccatgacagaatccactatgactggaggagacttttctgc |
44371261 |
T |
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| Q |
210 |
tctcaggacattaaactggcactcaaacttcccacccaccattaattataacaccgtcagggtcagaaacaatgaaccaagtcggtcgatattgtaagta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44371260 |
tctcaggacattaaactggcactcaaacttcccacccaccattaattataacaccgtcagggtcagaaacaatgaaccaa----gtcgatattgtaagta |
44371165 |
T |
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| Q |
310 |
cacatccttctcatcaaaggtcattctgcattaaggagtcatctaaaaaatgttttttg |
368 |
Q |
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| T |
44371164 |
cacatccttctcatcaaaggtcattctgcattaaggagtcatctaaaaaatgttttttg |
44371106 |
T |
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