View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_high_27 (Length: 378)
Name: NF5689_high_27
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 33230622 - 33230985
Alignment:
| Q |
1 |
gttaatttgcatgattttgcgtttttggtgtttgaggagcgcaagccatccatatttgttggtaaaatatttttgtgtatgtcatctttatgcttgatct |
100 |
Q |
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| T |
33230622 |
gttaatttgcatgattttgcgtttttggtgtttgaggagcgcaagccatccatgtttgttggtaaaatatttttgtgtatgtcatctttatgcttgatct |
33230721 |
T |
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| Q |
101 |
cgcttgactgtccttgatctgcgatcgcacagtgaaagcatgcagtgagcttccaattcccacttctacaaacttgttcaaacatgtaaaataatgcggc |
200 |
Q |
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| T |
33230722 |
cgcttgactgtccttgatctgcgatcgcacagtgaaagcatgcagtgagcttccaattcccacttctacaaacttgttcaaacatgtaaaataatgcggc |
33230821 |
T |
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| Q |
201 |
agaagggtgttgatcaggacctttaactgtacaatttatacttccattagatacattaaaattaacaaccatagaaagaccgatatctattttattttga |
300 |
Q |
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| T |
33230822 |
agaagggtgttgatcaggacctttaactgtacaatttatacttccattagatacattaaaattaacaaccattgaaagaccgatatctattttattttga |
33230921 |
T |
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| Q |
301 |
gtgaacatatttccttgactaatagcataatagtgtgtcacagttgttgtatagaggtatttat |
364 |
Q |
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| T |
33230922 |
gtgaacatatttccttgactaatagcataatagtgtgtcacagttgttgtatagaggtatttat |
33230985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 33222643 - 33222714
Alignment:
| Q |
150 |
cttccaattcccacttctacaaacttgttcaaacatgtaaaataatgcggcagaagggtgttgatcaggacc |
221 |
Q |
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|||||| ||||| |||||| | |||||||||||||| ||||| ||||| | ||||||||||||||||||||| |
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| T |
33222643 |
cttccagttcccgcttctatagacttgttcaaacatataaaacaatgctgaagaagggtgttgatcaggacc |
33222714 |
T |
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