View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_high_31 (Length: 350)
Name: NF5689_high_31
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 221 - 334
Target Start/End: Complemental strand, 41328551 - 41328438
Alignment:
| Q |
221 |
ttattcggattctataattcaaacatcatttcagattatgaaatccgaaacctccctatattataactcaaaatcagaaaacattcccttttctatagtt |
320 |
Q |
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| T |
41328551 |
ttattcggattctataattcaaacatcatttcagattatgaaatccgaaacctccctatattacaactcaaaatcagaaaacattcccttttctatagct |
41328452 |
T |
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| Q |
321 |
tctatatttgcttt |
334 |
Q |
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|||||||||||||| |
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| T |
41328451 |
tctatatttgcttt |
41328438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 41328732 - 41328552
Alignment:
| Q |
13 |
agggtgcgtgagtggcttggagggtggaaaaagaaatcattttctttttcttatactctata-nnnnnnnagtggaaagcacaaagaccaagtcacttct |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41328732 |
agggtgcgtgagtggcttggagggtggaaaaagaaatcattttctttttcttatactctatattttttttagtggaaagcacaaagaccaagtcacttct |
41328633 |
T |
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| Q |
112 |
taaagnnnnnnnnnatgtcttcgaccnnnnnnnnttaattactattacttttttcactctatgagattcccgcgagcccta |
192 |
Q |
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| T |
41328632 |
taaactttttttttatgtcttcgaccaaaaaaaattaatgactattacttttttcactctatgagattcccgcgagcccta |
41328552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 205 - 300
Target Start/End: Complemental strand, 27717010 - 27716916
Alignment:
| Q |
205 |
tttctaaaattatccgttattcggattctataattcaaacatcatttcagattatgaaatccgaaacctccctatattataactcaaaatcagaaa |
300 |
Q |
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| T |
27717010 |
tttctaaaattaccctttattcagattctataaatcgagcagcctttctgattatgaaatccaaaacctccatata-tataactcaaaatcagaaa |
27716916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 27704875 - 27704799
Alignment:
| Q |
205 |
tttctaaaattatccgttattcggattctataattcaaacatcatttcagattatgaaatccgaaacctccctatat |
281 |
Q |
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||||||||||||||| |||||| ||||| ||| | | | || | |||||||||||||||| | |||||||| ||||| |
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| T |
27704875 |
tttctaaaattatcctttattcagattcaatattccgatcaacctttcagattatgaaattcaaaacctccatatat |
27704799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 301
Target Start/End: Complemental strand, 39813549 - 39813460
Alignment:
| Q |
211 |
aaattatccgttattcggattctataattcaaacatcatttcagattatgaaatccgaaacctccctatattataactcaaaatcagaaaa |
301 |
Q |
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||||||||| |||||||||||||||||| | |||| |||| ||||||||||||| |||||| |||||| |||||||| ||||||||||| |
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| T |
39813549 |
aaattatcctttattcggattctataatccgaacaacattctggattatgaaatccaaaaccttcctata-tataactcgaaatcagaaaa |
39813460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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