View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5689_high_35 (Length: 327)
Name: NF5689_high_35
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_high_35 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 4500134 - 4499834
Alignment:
| Q |
18 |
aattctagtagctcaaagatgttattggaggaaatgttatctgcaaatttcaatggcttaattggtaatataagattcaaaaaaggaatactatcctaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4500134 |
aattctagtagctcaaagatgttattggaggaaatgttatctgcaaatttcaatggcttaattggtgatataagattcaaaaaaggaatactatcctaca |
4500035 |
T |
|
| Q |
118 |
ttccaatgttaagagtcattaaagtggttgataatgacaagaaacatatggaattggatattttgacaccaaagtttaagtttgctagatctcttcaaga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4500034 |
ttccaatgttaagagtcattaaagtggttgataatgacaagaaacatatggaattggatattttgacaccaaagtttaagtttgctagatctcttcgaga |
4499935 |
T |
|
| Q |
218 |
gaatacaggtgatggtggtaaagaaagcttaaatgactctgtaccaaagacatggaaagtacctactgatacaaatcctctaaaagttggaattcctatg |
317 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4499934 |
gaatacatgtgatggtggtaaagaaagcttaaatgattctgtacctaagacatggaaagtacctactgatacaaatcctctaaaagttggaattcctatg |
4499835 |
T |
|
| Q |
318 |
c |
318 |
Q |
| |
|
| |
|
|
| T |
4499834 |
c |
4499834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 4494566 - 4494372
Alignment:
| Q |
18 |
aattctagtagctcaaagatgttattggaggaaatgttatctgcaaatttcaatggcttaattggtaatataagattcaaaaaaggaatactatcctaca |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||| ||||||| |||||| ||||||||||| |
|
|
| T |
4494566 |
aattcaagtagctcaaagatgttattggaggaaatgttatcttcaaatttcaatggcttaatcggcgatataaaattcaaagaaggaaaactatcctaca |
4494467 |
T |
|
| Q |
118 |
ttccaatgttaagagtcattaaagtggttgataatgacaagaaacatatggaattggatattttgacaccaaagtttaagtttgctagatctctt |
212 |
Q |
| |
|
|||||| |||||||||| |||||| || ||||||| ||||||||||| ||| || | || |||||||||||| ||| | ||||||||||| |
|
|
| T |
4494466 |
ctccaatactaagagtcataaaagtgattaataatgataagaaacatattgaactgaactcttggacaccaaagttgaaggtgtctagatctctt |
4494372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 4507375 - 4507160
Alignment:
| Q |
18 |
aattctagtagctcaaagatgttattggaggaaatgttatctgcaaatttcaatggcttaattggtaatataagattcaaaaaaggaatactatcctaca |
117 |
Q |
| |
|
|||| |||||||||||||| ||| |||||||||||||||||| | ||||||||||| |||| ||||||||||| ||||||| || || ||||||||| | |
|
|
| T |
4507375 |
aattttagtagctcaaagacgttgttggaggaaatgttatcttccaatttcaatggtttaagtggtaatataaaattcaaagaaagacaactatcctata |
4507276 |
T |
|
| Q |
118 |
ttccaatgttaagagtcattaaagtggttgataatgacaagaaacatatggaattggatattttgacaccaaagtttaagtttgctagatctcttcaaga |
217 |
Q |
| |
|
|||||||||| ||| |||||||| | |||||| |||||||||| | || || || || ||||||||| || |||||| ||||||||||| |||| |
|
|
| T |
4507275 |
ctccaatgttagaagtttttaaagtgatgaataatgccaagaaacattttgagtttgactcttggacaccaaatttgaagttttctagatctcttaaaga |
4507176 |
T |
|
| Q |
218 |
gaatacaggtgatggt |
233 |
Q |
| |
|
|| ||| |||||||| |
|
|
| T |
4507175 |
gagcacaagtgatggt |
4507160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 313
Target Start/End: Complemental strand, 4494338 - 4494289
Alignment:
| Q |
264 |
aagacatggaaagtacctactgatacaaatcctctaaaagttggaattcc |
313 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| ||||||||| |||||| |
|
|
| T |
4494338 |
aagacatggaaagtgcctactgatataaatcctttaaaagttgcaattcc |
4494289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 4507147 - 4507096
Alignment:
| Q |
264 |
aagacatggaaagtacctactgatacaaatcctctaaaagttggaattccta |
315 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| ||||||||| | |||||| |
|
|
| T |
4507147 |
aagacatggaaagtacctactgatgcaaaccctttaaaagttgcacttccta |
4507096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University