View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_high_4 (Length: 565)
Name: NF5689_high_4
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 272 - 547
Target Start/End: Complemental strand, 5675261 - 5674986
Alignment:
| Q |
272 |
atcaaagtactaaagctaggagaattttgtcggatttgaccttgcaataggaacccgatccaagaaaagaaaaccaaatgtattctgggccataataacc |
371 |
Q |
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| T |
5675261 |
atcaaagtactaaagctaggagaattttgtcggatttgaccttgcaataggaacccgatccaaaaaaaggaaaccgaatgtattctgggccataataacc |
5675162 |
T |
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| Q |
372 |
cgaacccaaccgaaatacgcaaaatccaaacaaccttgaacatttccttacactcgacaacagtggaatttcgcaatctcctagcgttgaatctccagat |
471 |
Q |
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| T |
5675161 |
cgaacccaaccgaaatacgcaaaatccaaacaaccttgaacatttccttacactcgacaacagtggaatttcgcaatctcctagcgttgaatctccagat |
5675062 |
T |
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| Q |
472 |
caaatgacaaccgtacgatcaaatccaaccctcatcatcttctttttcttaattctcttcatcacaccctcccaat |
547 |
Q |
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| T |
5675061 |
caaatgacaaccgtacgatcaaatccaaccctcatcatcttctttttcttaattctcttcatcacaccctcccaat |
5674986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 5675398 - 5675332
Alignment:
| Q |
132 |
ccaatgttaaagtatgtgtatataacatacccgtgagattaaacttaattaaccataattttcctca |
198 |
Q |
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| T |
5675398 |
ccaatgttaaagtatgtgtatataacatacccgtgagattaaactcaattaaccataatttccctca |
5675332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 5676448 - 5676407
Alignment:
| Q |
9 |
gaagaatattgcccctaagataaccataatggaaaagttgta |
50 |
Q |
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| T |
5676448 |
gaagaatattgcccctaagttaaccataatggaaaagttgta |
5676407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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