View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_high_43 (Length: 312)
Name: NF5689_high_43
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 93 - 289
Target Start/End: Complemental strand, 10599710 - 10599517
Alignment:
| Q |
93 |
atcttatatcatggttattaatttataaacaaacactaaccggtaatgtcannnnnnnn-agatgctcgagaacaagcaattttgtgagctgacgttgga |
191 |
Q |
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| T |
10599710 |
atcttatatcatggttattaatttataaaca----ctaaccgttaatgtcttttttttttagatgctcgagaacaagcaatttcgtgagctgacgttgga |
10599615 |
T |
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| Q |
192 |
aaagaaaacgaccattatcaaggtcattgacgattgcggcaatcggtgggactatattgctgtttaccaatctctgcctgaaaaacaatttaaggttg |
289 |
Q |
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| T |
10599614 |
aaagaaaacgaccattatcaaggtcattgacgattgctgcaatcggtgggactatattgctgtttaccaatctctgcctgaaaaacaatttaaggttg |
10599517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 10599830 - 10599742
Alignment:
| Q |
10 |
attattctactctctttccaacatgacatgtgttatatatatgtctt--atgctaacaatttcatttgtcagctgatgatgttgaatct |
96 |
Q |
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| T |
10599830 |
attattctactctctttccaacgtgacatgtgttatatatatgtgttttatgctaacaatttcatttgtcagctgatgatgttgaatct |
10599742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 152 - 289
Target Start/End: Original strand, 6254609 - 6254746
Alignment:
| Q |
152 |
agatgctcgagaacaagcaattttgtgagctgacgttggaaaagaaaacgaccattatcaaggtcattgacgattgcggcaatcggtgggactatattgc |
251 |
Q |
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| T |
6254609 |
agatgctccaggacaagcaattttgtgagctgatgttggaaaggaagacgaccattatcatggtcattgacgattgcggcaatcggtgagactgtattga |
6254708 |
T |
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| Q |
252 |
tgtttaccaatctctgcctgaaaaacaatttaaggttg |
289 |
Q |
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| T |
6254709 |
tgtttactaatctctgcctgaaaaacaatttaaggttg |
6254746 |
T |
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