View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5689_high_46 (Length: 308)

Name: NF5689_high_46
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5689_high_46
NF5689_high_46
[»] chr8 (3 HSPs)
chr8 (17-296)||(9692328-9692608)
chr8 (17-299)||(9675306-9675589)
chr8 (160-228)||(21463943-21464011)
[»] chr4 (3 HSPs)
chr4 (28-297)||(35162672-35162942)
chr4 (37-288)||(35155661-35155913)
chr4 (154-297)||(15556246-15556390)
[»] chr3 (27 HSPs)
chr3 (154-299)||(46236538-46236687)
chr3 (146-297)||(47397047-47397199)
chr3 (151-229)||(46480093-46480171)
chr3 (17-111)||(46236388-46236482)
chr3 (154-278)||(16025737-16025862)
chr3 (152-297)||(46544706-46544852)
chr3 (18-112)||(47413795-47413889)
chr3 (154-288)||(5156488-5156626)
chr3 (154-297)||(46526169-46526316)
chr3 (149-229)||(46498251-46498331)
chr3 (141-297)||(5160508-5160668)
chr3 (154-297)||(45883483-45883624)
chr3 (151-216)||(4581132-4581197)
chr3 (151-216)||(4613589-4613654)
chr3 (154-223)||(46548750-46548819)
chr3 (152-228)||(47413941-47414017)
chr3 (153-212)||(46484360-46484419)
chr3 (149-206)||(46491029-46491086)
chr3 (154-215)||(46532224-46532285)
chr3 (248-297)||(46554026-46554075)
chr3 (20-112)||(46480222-46480314)
chr3 (153-295)||(46539233-46539376)
chr3 (69-115)||(5156671-5156717)
chr3 (154-212)||(46474243-46474301)
chr3 (174-216)||(53390988-53391030)
chr3 (16-112)||(16025907-16026003)
chr3 (28-112)||(51944319-51944403)
[»] chr2 (3 HSPs)
chr2 (141-295)||(20144865-20145020)
chr2 (141-295)||(20168754-20168909)
chr2 (187-295)||(20359375-20359484)
[»] chr7 (5 HSPs)
chr7 (169-289)||(17708515-17708636)
chr7 (152-251)||(17699445-17699544)
chr7 (184-251)||(17736208-17736275)
chr7 (169-251)||(16722431-16722513)
chr7 (152-289)||(17718339-17718477)


Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 9692328 - 9692608
Alignment:
Q  17 caacaagaggattgagaacctgtccggcaaagatgatcgtttgggtcgaatcttctctaattagaaatagaaaagggtgatcggctataaagtctattcc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9692328 caacaagaggattgagaacctgtccggcaaagatgatcgtttgggtcaaatcttctctaattagaaataggaaagggtgatcggctataaagtctattcc 9692427  T
Q  117 agttggcatacacatggccaccactgcaacactggccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaaca 216  Q
    ||||||||||||||||||||||||||||| | |||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9692428 agttggcatacacatggccaccactgcaatattggccttagcagcttcagtgccttcctcgtttacttcaatgaaagacttgtgaaatatgttggaaaca 9692527  T
Q  217 gaaaggtcttgaccttcaagagagtccacca-ttttgttaaacctccagaagagaaaggtaaactcactcctaactccttc 296  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9692528 gaaaggtcttgaccttcaagagagtccaccatttttgtcaaacctccagaagagaaaggtaaactcactcctaactccttc 9692608  T

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Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 9675306 - 9675589
Alignment:
Q  17 caacaagaggattgagaacctgtccggcaaagatgatcgtttgggtcgaatcttctctaattagaaatagaaaagggtgatcggctataaagtctattcc 116  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9675306 caacaagaggattgagaacctgtccggcaaagatgattgtttgggtcgaatcttctctaattagaaataggaaagggtgatcggctataaagtctattcc 9675405  T
Q  117 agttggcatacacatggccaccactgcaacactggccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaaca 216  Q
    |||||||  ||||| | || | | |  | || |||| | ||||||||||||||||||||| ||||| ||||||  |||||||||||||||||||||||||    
T  9675406 agttggcgcacacaagacccctattttagcattggctgtagcagcttcagtgccttcctcatttacttcaatggtagacttgtgaaatatgttggaaaca 9675505  T
Q  217 gaaaggtcttgaccttcaagagagtccacca-ttttgttaaacctccagaagagaaaggtaaactcactcctaactccttcatc 299  Q
    |||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| ||||||||||    
T  9675506 gaaaagtcttgaccttcaagagagtccaccatttttgtcaaacctccagaagagaaaggtaaaatcactcctagctccttcatc 9675589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 21463943 - 21464011
Alignment:
Q  160 gcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttga 228  Q
    ||||| || ||||| |||||||| ||||| ||||||||||||||||||||||| ||| |||||| ||||    
T  21463943 gcttcggtaccttcttcgtttacttcaataaaagacttgtgaaatatgttggacacataaaggttttga 21464011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 28 - 297
Target Start/End: Complemental strand, 35162942 - 35162672
Alignment:
Q  28 ttgagaacctgtccggcaaagatgatcgtttgggtcgaatcttctctaattagaaatagaaaagggtgatcggctataaagtctattccagttggcatac 127  Q
    ||||| || ||||| ||||||| ||| |||||||||||||||||||||||||||||||  ||||| ||||| ||||||||||||| ||| ||||| ||||    
T  35162942 ttgagcacttgtcccgcaaagaggattgtttgggtcgaatcttctctaattagaaataagaaaggatgatcagctataaagtctactccggttggaatac 35162843  T
Q  128 acatggccaccactgcaacactggccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttg 227  Q
    || ||||||  | ||||   ||||| ||||||||| | ||||||| ||| ||||| ||||||||||||||||||||||||||||||||  |||||| |||    
T  35162842 acttggccataagtgcacagctggctgcagcagctacggtgcctttctcatttacttcaatgaaagacttgtgaaatatgttggaaactaaaaggttttg 35162743  T
Q  228 accttcaagagagtccacca-ttttgttaaacctccagaagagaaaggtaaactcactcctaactccttca 297  Q
    ||||||||| |||||||||| |||||| |||||||||||||||||||||||| |||||||||  |||||||    
T  35162742 accttcaagtgagtccaccatttttgtcaaacctccagaagagaaaggtaaaatcactcctagatccttca 35162672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 37 - 288
Target Start/End: Complemental strand, 35155913 - 35155661
Alignment:
Q  37 tgtccggcaaagatgatcgtttgggtcgaatcttctctaattagaaatagaaaagggtgatcggctataaagtctattccagttggcatacacatggcca 136  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||| |||||  ||||||||||| ||||||||||||| ||| ||||   ||| || ||  |    
T  35155913 tgtccggcaaagaggattgtttgggtcaaatcttctctaattaaaaataagaaagggtgatcagctataaagtctagtccggttgatctacccaaggtaa 35155814  T
Q  137 ccactgcaacactggccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaag 236  Q
      | || |  |||||| ||| |||||| ||||||||  |||||||| ||||| ||| |||| ||||||||||||  ||| || || | ||||||||||||    
T  35155813 ataatgtagtactggctgcaacagctttagtgcctttttcgtttacttcaataaaacacttctgaaatatgttgctaacggagagattttgaccttcaag 35155714  T
Q  237 agagtccacca-ttttgttaaacctccagaagagaaaggtaaactcactccta 288  Q
    ||||||||||| |||||| ||||| |||||||||||||||||| |||||||||    
T  35155713 agagtccaccatttttgtcaaacccccagaagagaaaggtaaaatcactccta 35155661  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 154 - 297
Target Start/End: Complemental strand, 15556390 - 15556246
Alignment:
Q  154 gcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccatttt-g 252  Q
    |||||||||||||||||||| |||||||| |  ||||||||||| || |||||||| |||||| | |||||||||||  |||| |||||||||||||| |    
T  15556390 gcagcagcttcagtgccttcttcgtttacttggatgaaagacttttggaatatgttagaaacaaacaggtcttgacccgcaagtgagtccaccattttag 15556291  T
Q  253 ttaaacctccagaagagaaaggtaaactcactcctaactccttca 297  Q
    | |||||||| | |||||||||||||  ||||||||  |||||||    
T  15556290 tcaaacctccgggagagaaaggtaaaaccactcctaggtccttca 15556246  T

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Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 154 - 299
Target Start/End: Original strand, 46236538 - 46236687
Alignment:
Q  154 gcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaa---gagagtccacca-tt 249  Q
    |||||| ||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||| | |||| || ||| ||||    ||| ||||| | ||    
T  46236538 gcagcaacttcagtgccttcttcatttacttcaatgaaagatttgtgaaatatgttggaaacatataggttttcaccctcaaaagaagaatccacaattt 46236637  T
Q  250 ttgttaaacctccagaagagaaaggtaaactcactcctaactccttcatc 299  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||||||||    
T  46236638 ttgtaaaacctccagcagagaaaggtaaaatcactcctaactccttcatc 46236687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 297
Target Start/End: Original strand, 47397047 - 47397199
Alignment:
Q  146 cactggccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccac 245  Q
    |||| |||| |||| ||| |||||||| ||| ||||| ||||||||| |||| |||||||||||||||||| |||||| ||||||  | ||| ||||||     
T  47397047 cactagccgaagcaactttagtgcctttctcatttacttcaatgaaatacttctgaaatatgttggaaacaaaaaggttttgacccgctagaaagtccat 47397146  T
Q  246 ca-ttttgttaaacctccagaagagaaaggtaaactcactcctaactccttca 297  Q
    || |||||||||||||||    |||||||||||| ||||||||||||||||||    
T  47397147 catttttgttaaacctccgagggagaaaggtaaaatcactcctaactccttca 47397199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 46480171 - 46480093
Alignment:
Q  151 gccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgac 229  Q
    ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||| |||||| |||||    
T  46480171 gccgcagcagcttcagtgccttcttcatttacttcaatgaaagacttgtgaaatatattggaaacacaaaggttttgac 46480093  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 46236388 - 46236482
Alignment:
Q  17 caacaagaggattgagaacctgtccggcaaagatgatcgtttgggtcgaatcttctctaattagaaatagaaaagggtgatcggctataaagtct 111  Q
    |||||| ||||||||| |||||||| ||||||| ||| |||  ||||||| ||||||||||||||||||| ||||||||||| |||| |||||||    
T  46236388 caacaacaggattgagcacctgtccagcaaagaggattgttccggtcgaaacttctctaattagaaataggaaagggtgatcagctacaaagtct 46236482  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 278
Target Start/End: Complemental strand, 16025862 - 16025737
Alignment:
Q  154 gcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccacca-ttttg 252  Q
    |||||| ||||||| ||||| || ||||| || |||||||| ||||||||||||   |||||| | |||||||||  ||||||| ||||||||| |||||    
T  16025862 gcagcaacttcagttccttcttcatttacttcgatgaaagatttgtgaaatatgcgagaaacaaagaggtcttgatgttcaagaaagtccaccatttttg 16025763  T
Q  253 ttaaacctccagaagagaaaggtaaa 278  Q
    | |||||||||| |||||||||||||    
T  16025762 tcaaacctccaggagagaaaggtaaa 16025737  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 152 - 297
Target Start/End: Complemental strand, 46544852 - 46544706
Alignment:
Q  152 ccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccat-tt 250  Q
    |||||||||||||||| || |  || ||||| ||||| ||||||||||| ||||||||||||| |  ||||| |||| |   | ||||||||||||| ||    
T  46544852 ccgcagcagcttcagttcccttttcatttacttcaataaaagacttgtggaatatgttggaaatatgaaggttttgatccataggagagtccaccatatt 46544753  T
Q  251 tgttaaacctccagaagagaaaggtaaactcactcctaactccttca 297  Q
    ||| |||||||| | |||||||||||||  |||||||| ||||||||    
T  46544752 tgtcaaacctcctgtagagaaaggtaaaaccactcctagctccttca 46544706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 47413795 - 47413889
Alignment:
Q  18 aacaagaggattgagaacctgtccggcaaagatgatcgtttgggtcgaatcttctctaattagaaatagaaaagggtgatcggctataaagtcta 112  Q
    ||||||||||||||| || |||||  |||||| ||| |||| ||| ||||||||||||||||||||||  |||||||| ||||||| ||||||||    
T  47413795 aacaagaggattgagcacatgtccaacaaagaggattgtttcggttgaatcttctctaattagaaataagaaagggtggtcggctacaaagtcta 47413889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 288
Target Start/End: Complemental strand, 5156626 - 5156488
Alignment:
Q  154 gcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaagg-tcttgaccttcaa---gagagtccacca-t 248  Q
    |||||||||||||||||||| || ||||| ||||||||||| ||||||||||| || |||||||||||| | ||| ||  |||   |||||||||||| |    
T  5156626 gcagcagcttcagtgccttcttcatttacttcaatgaaagatttgtgaaatattttagaaacagaaaggctattg-cccacaagaggagagtccaccatt 5156528  T
Q  249 tttgttaaacctccagaagagaaaggtaaactcactccta 288  Q
    ||||| |||||||||  || |||||||||| |||||||||    
T  5156527 tttgtcaaacctccacgagtgaaaggtaaaatcactccta 5156488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 297
Target Start/End: Original strand, 46526169 - 46526316
Alignment:
Q  154 gcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgac---cttcaagagagtccaccat-t 249  Q
    ||||||||||| |||||| |||| ||||| ||||||| ||||||||||||||| ||||||||  |||||| |||||   | |   |||||||||| || |    
T  46526169 gcagcagcttcggtgcctccctcatttacttcaatgagagacttgtgaaatattttggaaacgtaaaggttttgacttgcgtgttgagagtccacaatat 46526268  T
Q  250 ttgttaaacctccagaagagaaaggtaaactcactcctaactccttca 297  Q
    |||| ||||| ||| |||||||||||||| ||||| ||||||| ||||    
T  46526269 ttgtcaaacccccacaagagaaaggtaaaatcacttctaactctttca 46526316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 46498331 - 46498251
Alignment:
Q  149 tggccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgac 229  Q
    |||||||||||||||  |||||||| || ||||| ||||||||||||||||| ||||| ||||||||| |||||| |||||    
T  46498331 tggccgcagcagctttggtgccttcttcatttacttcaatgaaagacttgtggaatattttggaaacataaaggttttgac 46498251  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 297
Target Start/End: Complemental strand, 5160668 - 5160508
Alignment:
Q  141 tgcaacactggccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagaga- 239  Q
    |||| ||||| | ||| |||||||||  ||||| || ||||| ||||||||||| ||||||||||| || ||||| ||||||   | |||  |||||||     
T  5160668 tgcagcactgactgcaacagcttcagcaccttcttcatttacttcaatgaaagatttgtgaaatattttagaaactgaaaggctatcacccacaagagaa 5160569  T
Q  240 --gtccaccatttt-gttaaacctccagaagagaaaggtaaactcactcctaactccttca 297  Q
      |||||||||||| || |||||| ||  || |||||||||| ||||||||||||||||||    
T  5160568 gagtccaccatttttgtcaaaccttcacgagtgaaaggtaaagtcactcctaactccttca 5160508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 297
Target Start/End: Original strand, 45883483 - 45883624
Alignment:
Q  154 gcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccacca-ttttg 252  Q
    |||||||||||||||||||| || || || ||||||||||||| |||||| ||||  |||| | |||||||||||   |   || ||||||||| |||||    
T  45883483 gcagcagcttcagtgccttcttcattaacttcaatgaaagactagtgaaaaatgtgagaaatataaaggtcttga---tttggatagtccaccatttttg 45883579  T
Q  253 ttaaacctccagaagagaaaggtaaactcactcctaactccttca 297  Q
    | |||| ||||  |||||||||| ||  |||||||||||||||||    
T  45883580 tcaaacttccacgagagaaaggtgaaaccactcctaactccttca 45883624  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 4581132 - 4581197
Alignment:
Q  151 gccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaaca 216  Q
    ||||||||||||||||| ||| | || ||||| ||||| ||||||||||||||||| |||||||||    
T  4581132 gccgcagcagcttcagtacctgcttcatttacttcaataaaagacttgtgaaatatcttggaaaca 4581197  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 4613589 - 4613654
Alignment:
Q  151 gccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaaca 216  Q
    ||||||||||||||||| ||| | || ||||| ||||| ||||||||||||||||| |||||||||    
T  4613589 gccgcagcagcttcagtacctgcttcatttacttcaataaaagacttgtgaaatatcttggaaaca 4613654  T

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Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 46548750 - 46548819
Alignment:
Q  154 gcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggt 223  Q
    |||||||||||| | ||||| || ||||| ||||||||||||||||||||||| || |||||| ||||||    
T  46548750 gcagcagcttcattaccttcttcttttacttcaatgaaagacttgtgaaatattttagaaacataaaggt 46548819  T

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Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 47413941 - 47414017
Alignment:
Q  152 ccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttga 228  Q
    |||||||||||||||| ||||| || || || || |||||||||||||||||||| | ||||||| || ||||||||    
T  47413941 ccgcagcagcttcagttccttcttcattcacttcgatgaaagacttgtgaaatatctgggaaacaaaatggtcttga 47414017  T

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Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 46484419 - 46484360
Alignment:
Q  153 cgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttgga 212  Q
    ||||||||||||||||||||| || ||||| ||||||||||| ||||| ||||| |||||    
T  46484419 cgcagcagcttcagtgccttcttcatttacttcaatgaaagatttgtgcaatatattgga 46484360  T

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Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 46491086 - 46491029
Alignment:
Q  149 tggccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatat 206  Q
    |||| ||| ||||||| |||||||| || ||||||||||| |||||||||||||||||    
T  46491086 tggctgcaacagcttcggtgccttcttcatttacatcaataaaagacttgtgaaatat 46491029  T

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Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 46532285 - 46532224
Alignment:
Q  154 gcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaac 215  Q
    |||||||||||||||||||  || ||||| ||||||||||| || ||||||||||| |||||    
T  46532285 gcagcagcttcagtgcctttttcatttacttcaatgaaagaattttgaaatatgttagaaac 46532224  T

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Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 46554026 - 46554075
Alignment:
Q  248 ttttgttaaacctccagaagagaaaggtaaactcactcctaactccttca 297  Q
    ||||||||||||||||  ||||||||||||| ||||||| ||||||||||    
T  46554026 ttttgttaaacctccattagagaaaggtaaaatcactcccaactccttca 46554075  T

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Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 46480314 - 46480222
Alignment:
Q  20 caagaggattgagaacctgtccggcaaagatgatcgtttgggtcgaatcttctctaattagaaatagaaaagggtgatcggctataaagtcta 112  Q
    ||||||||||||| ||||||||  |||||||||| |||  |||| | ||||||||||| | |||||  |||||||| || |||| ||||||||    
T  46480314 caagaggattgagcacctgtccaacaaagatgattgttccggtcaagtcttctctaatcataaataagaaagggtggtcagctacaaagtcta 46480222  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 295
Target Start/End: Complemental strand, 46539376 - 46539233
Alignment:
Q  153 cgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccacca-tttt 251  Q
    |||||||||||  || ||||  || ||||| ||||| ||||||||||| ||||  | ||||||| |||||| ||||| |  | |||||||||||| ||||    
T  46539376 cgcagcagctttggttccttgttcatttacttcaataaaagacttgtggaatacatcggaaacataaaggttttgacttgtaggagagtccaccattttt 46539277  T
Q  252 gttaaacctccagaagagaaaggtaaactcactcctaactcctt 295  Q
    || ||||||||   |||||||||||||  || ||||| ||||||    
T  46539276 gtcaaacctccttgagagaaaggtaaaaccattcctagctcctt 46539233  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 5156717 - 5156671
Alignment:
Q  69 ttctctaattagaaatagaaaagggtgatcggctataaagtctattc 115  Q
    |||||||||||||||||  ||||||||||| |||| |||||||||||    
T  5156717 ttctctaattagaaataagaaagggtgatcagctacaaagtctattc 5156671  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 46474301 - 46474243
Alignment:
Q  154 gcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttgga 212  Q
    |||||||||||||||||||| || ||||| ||||||||| | ||||| ||||| |||||    
T  46474301 gcagcagcttcagtgccttcttcatttacttcaatgaaatatttgtgcaatatattgga 46474243  T

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Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 53391030 - 53390988
Alignment:
Q  174 ctcgtttacatcaatgaaagacttgtgaaatatgttggaaaca 216  Q
    ||||||||| ||||||||||||||||||||||| || ||||||    
T  53391030 ctcgtttacttcaatgaaagacttgtgaaatatatttgaaaca 53390988  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 16026003 - 16025907
Alignment:
Q  16 tcaacaagaggattgagaacctgtccggcaaagatgatcgtttgggtcgaatcttctctaattagaaatagaaaagggtgatcggctataaagtcta 112  Q
    ||||||| ||||||||| || || ||  |||||| ||| |||| |||  |||||||||||||||||||||  |||||||| || |||| ||| ||||    
T  16026003 tcaacaaaaggattgagtacttgccctacaaagaggattgtttcggttaaatcttctctaattagaaataagaaagggtggtcagctacaaaatcta 16025907  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 51944403 - 51944319
Alignment:
Q  28 ttgagaacctgtccggcaaagatgatcgtttgggtcgaatcttctctaattagaaatagaaaagggtgatcggctataaagtcta 112  Q
    ||||| ||||||||  |||||||||| |||   ||| ||||||||||||| |||||||  |||||||| || |||| ||||||||    
T  51944403 ttgagcacctgtccaacaaagatgattgttccagtcaaatcttctctaatcagaaataagaaagggtggtcagctacaaagtcta 51944319  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 141 - 295
Target Start/End: Complemental strand, 20145020 - 20144865
Alignment:
Q  141 tgcaacactggccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagag 240  Q
    |||| |||| || |||||| |||| || ||||| ||||||||    ||||||||||||||||||||||  ||||||||||||  ||||||  ||||||||    
T  20145020 tgcagcactagctgcagcaacttcggtaccttcttcgtttactctgatgaaagacttgtgaaatatgtgagaaacagaaaggctttgacccgcaagagag 20144921  T
Q  241 tccacca-ttttgttaaacctccagaagagaaaggtaaactcactcctaactcctt 295  Q
    ||||||| |||||| |||||||||| | |||| ||||||  |||||||||||||||    
T  20144920 tccaccatttttgtcaaacctccaggaaagaatggtaaaaccactcctaactcctt 20144865  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 295
Target Start/End: Original strand, 20168754 - 20168909
Alignment:
Q  141 tgcaacactggccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagag 240  Q
    |||| |||| || |||||| |||| || ||||| ||||||||    ||||||||||||||||||||||  |||||| |||||  ||||||  | | |||     
T  20168754 tgcagcactagctgcagcaacttcggtaccttcttcgtttactctgatgaaagacttgtgaaatatgtgagaaacaaaaaggctttgacccgcgatagaa 20168853  T
Q  241 tccacca-ttttgttaaacctccagaagagaaaggtaaactcactcctaactcctt 295  Q
    ||||||| |||||| |||||||||| | |||| |||||| ||||||||||| ||||    
T  20168854 tccaccatttttgtcaaacctccaggaaagaatggtaaaatcactcctaacccctt 20168909  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 295
Target Start/End: Complemental strand, 20359484 - 20359375
Alignment:
Q  187 atgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccattttgtt-aaacctccagaagagaaaggtaaactcactc 285  Q
    |||||||||||||||||||||   |||||| |||||  ||||||  | | ||| ||||||||||| || |||||||||| | |||| |||||| ||||||    
T  20359484 atgaaagacttgtgaaatatgcgagaaacaaaaaggctttgacccgcgatagaatccaccatttttttcaaacctccaggaaagaatggtaaagtcactc 20359385  T
Q  286 ctaactcctt 295  Q
    ||||||||||    
T  20359384 ctaactcctt 20359375  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 17708636 - 17708515
Alignment:
Q  169 ccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccacca-ttttgttaaacctccagaag 267  Q
    ||||| || ||||| |||||||||||||| |||||||||  ||||||| |||| ||||||| |  | |||||||||||| |||||| ||||||||   ||    
T  17708636 ccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccatttttgtcaaacctcccatag 17708537  T
Q  268 agaaaggtaaactcactcctaa 289  Q
    | ||||||||| ||| ||||||    
T  17708536 aaaaaggtaaagtcaatcctaa 17708515  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 251
Target Start/End: Complemental strand, 17699544 - 17699445
Alignment:
Q  152 ccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccatttt 251  Q
    |||| |||||||  || ||||| || ||||| |||||||||||||| |||||||||  ||||||| |||| ||||||| |  | ||||||||||||||||    
T  17699544 ccgctgcagctttcgtaccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccatttt 17699445  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 17736275 - 17736208
Alignment:
Q  184 tcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccatttt 251  Q
    |||||||||||||| ||||||||| ||| ||||||||| ||||||| |  | ||||||||||||||||    
T  17736275 tcaatgaaagacttctgaaatatgctggtaacagaaagttcttgacttataggagagtccaccatttt 17736208  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 16722513 - 16722431
Alignment:
Q  169 ccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccatttt 251  Q
    ||||| || ||||| |||||||||||||| |||||||||  ||||||| |||| ||||||| |  | ||||||||||||||||    
T  16722513 ccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccatttt 16722431  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 289
Target Start/End: Complemental strand, 17718477 - 17718339
Alignment:
Q  152 ccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccacca-ttt 250  Q
    |||| |||||||  || ||||| |||||||| |||||| ||||||| |||| ||||| ||||||| | |  ||||||| |  | |||||||||||| |||    
T  17718477 ccgctgcagcttttgtaccttcttcgtttacttcaatgcaagacttctgaagtatgtcggaaacaaatatttcttgacttataggagagtccaccatttt 17718378  T
Q  251 tgttaaacctccagaagagaaaggtaaactcactcctaa 289  Q
    ||| ||||||||   ||| ||||||||| ||| ||||||    
T  17718377 tgtcaaacctcccatagaaaaaggtaaagtcaatcctaa 17718339  T

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