View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5689_high_49 (Length: 287)
Name: NF5689_high_49
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_high_49 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 4 - 271
Target Start/End: Original strand, 4845549 - 4845816
Alignment:
| Q |
4 |
atcaacccaaatgagaagctaaacataactttcattcccaacaacacaaaccaattgaatcctagttatgctttcattaacggaatcgaagttgtgtcga |
103 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||| |||| ||||||| |||| ||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
4845549 |
atcaaaccaaatgggaagctaaacataactttctttccgaacaacataaacgaattgaatcctttttatgctttcgttaacggaatcgaagttgtgtcga |
4845648 |
T |
|
| Q |
104 |
tgccttcttttctctattacacaaacccagatgacctaaattattatttcaaattaattggctttgacaacagcgaatacgaaattcgtaatgataaagc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4845649 |
tgccttcttttctctattacacaaacccagatgacttaaattattatttcaaattaattggctttgacaacagagaatacgaaattcgtaatgataaagc |
4845748 |
T |
|
| Q |
204 |
tttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatgt |
271 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||| ||||| | ||||||||||||| |
|
|
| T |
4845749 |
tttggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggtatgt |
4845816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 4815798 - 4816068
Alignment:
| Q |
1 |
caaatcaacccaaatgagaagctaaacataactttcattcccaacaacacaaaccaattgaatcctagttatgctttcattaacggaatcgaagttgtgt |
100 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4815798 |
caaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaaccaattgagtcctagttatgctttcattaacggaatcgaagttgtgt |
4815897 |
T |
|
| Q |
101 |
cgatgccttcttttctctattacacaaacc-cagatgacctaaattattatttcaaattaattggctttgacaacagcgaatacgaaattcgtaatgata |
199 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||| ||||| | ||||| | |||| ||| ||| | |||||||| |||||| || ||| ||| | | |
|
|
| T |
4815898 |
ctatgccttcttttctctattacacaaacctcag-tgaccaagattatcgtatcaagttacctggttctgacaacacggaataccaagttcttaacaaca |
4815996 |
T |
|
| Q |
200 |
aagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatgt |
271 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
4815997 |
aagctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaaaccaagatacaggcatgt |
4816068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 4783369 - 4783639
Alignment:
| Q |
1 |
caaatcaacccaaatgagaagctaaacataactttcattcccaacaacacaaaccaattgaatcctagttatgctttcattaacggaatcgaagttgtgt |
100 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4783369 |
caaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaaccaattgattcctagttatgctttcattaacggaatcgaagttgtgt |
4783468 |
T |
|
| Q |
101 |
cgatgccttcttttctctattacacaaacc-cagatgacctaaattattatttcaaattaattggctttgacaacagcgaatacgaaattcgtaatgata |
199 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||| ||||| | ||||| | |||| ||| ||| |||||||||| || || || ||| ||| | | |
|
|
| T |
4783469 |
ctatgccttcttttctctattacacaaacctcag-tgaccaagattatcttatcaatttacctggttttgacaacacggattatcaagttcttaactaca |
4783567 |
T |
|
| Q |
200 |
aagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatgt |
271 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
4783568 |
aagctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaaaccaagatacaggcatgt |
4783639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 4711606 - 4711876
Alignment:
| Q |
1 |
caaatcaacccaaatgagaagctaaacataactttcattcccaacaacacaaaccaattgaatcctagttatgctttcattaacggaatcgaagttgtgt |
100 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||| ||||||| ||| || | |||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
4711606 |
caaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgt |
4711705 |
T |
|
| Q |
101 |
cgatgccttcttttctctattacacaaacccagatgacctaaattattatttcaaattaattggctttgacaacagcgaatacgaaattcgtaatgataa |
200 |
Q |
| |
|
| ||||||||||||||||||||||| ||| |||||| ||| || ||| |||| | ||| ||||||||||| |||||| |||||| ||| || || |
|
|
| T |
4711706 |
ctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaataccaaattcataacgacaa |
4711805 |
T |
|
| Q |
201 |
agctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatgt |
271 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4711806 |
agctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatgt |
4711876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 4637418 - 4637148
Alignment:
| Q |
1 |
caaatcaacccaaatgagaagctaaacataactttcattcccaacaacacaaaccaattgaatcctagttatgctttcattaacggaatcgaagttgtgt |
100 |
Q |
| |
|
|||||||| |||||||| ||| ||||||||||||||||||| |||| || |||||||| |||||| |||||||||| |||||||| ||||||||||||| |
|
|
| T |
4637418 |
caaatcaaaccaaatgaaaagttaaacataactttcattcctaacagcataaaccaatcaaatccttgttatgcttttattaacgggatcgaagttgtgt |
4637319 |
T |
|
| Q |
101 |
cgatgccttcttttctctattacacaaacccagatgacctaaattattatttcaaattaattggctttgacaacagcgaatacgaaattcgtaatgataa |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||| |||||| ||||| ||| | ||| || || ||| |||||| ||||| ||| || || |
|
|
| T |
4637318 |
caatgccttcttttctctattacacaaacctcaatgacccaaattactatttgaaaccagttgactcagagtacacggaataccgaattcataaagacaa |
4637219 |
T |
|
| Q |
201 |
agctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatgt |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
4637218 |
agctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaagtgatgatacaggtatgt |
4637148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 4696724 - 4696994
Alignment:
| Q |
1 |
caaatcaacccaaatgagaagctaaacataactttcattcccaacaacacaaaccaattgaatcctagttatgctttcattaacggaatcgaagttgtgt |
100 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||||||||||||||| ||||| |||||| | |||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
4696724 |
caaaccaaaccaaatgagaagttaaacataactttcattcccagcaacataaaccagtcaaatccttattatgctttcattaacggaatagaagttgtgt |
4696823 |
T |
|
| Q |
101 |
cgatgccttcttttctctattacacaaacc-cagatgacctaaattattatttcaaattaattggctttgacaacagcgaatacgaaattcgtaatgata |
199 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||| ||||| ||| ||| |||| | || | ||| ||| |||||||| || ||| || ||| ||| || | |
|
|
| T |
4696824 |
caatgccttcttttctctattacacaaacctcag-tgacccaaaatatcatttgatatcacttgacttagacaacagggactaccaagttcttaacgaca |
4696922 |
T |
|
| Q |
200 |
aagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatgt |
271 |
Q |
| |
|
|||| || |||| ||||||||||||||| || ||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
4696923 |
aagcgttagagacggtttatagagtcaatgtgggtggcaatcaagttccaccaaaccaagatactggtatgt |
4696994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 4673264 - 4673014
Alignment:
| Q |
1 |
caaatcaacccaaatgagaagctaaacataactttcattcccaacaacacaaaccaattgaatcctagttatgctttcattaacggaatcgaagttgtgt |
100 |
Q |
| |
|
|||||||| || ||||||||||||||||||| ||||||||| | || || ||| ||| ||| || |||||||||||||||||||||||| |||||| |
|
|
| T |
4673264 |
caaatcaagcccaatgagaagctaaacataaatttcattccaagcatcatgaacaaatcaaatgttaaatatgctttcattaacggaatcgaaattgtgt |
4673165 |
T |
|
| Q |
101 |
cgatgccttcttttctctattacacaaacc-cagatgacctaaattattatttcaaattaattggctttgacaacagcgaatacgaaattcgtaatgata |
199 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||| ||||| ||||||| |||| |||| | ||| ||| ||||||| |||||| |||||| ||| || | |
|
|
| T |
4673164 |
caatgccttcttttctctattacacaaacctcag-tgacccaaattatcatttgaaatcacttgacttagacaacacggaataccaaattcataacgaaa |
4673066 |
T |
|
| Q |
200 |
aagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccacc |
251 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
4673065 |
aagctttggaaatggtttatagagtcaacgttggtgaaagtcaagttccacc |
4673014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 66 - 271
Target Start/End: Complemental strand, 4644203 - 4643998
Alignment:
| Q |
66 |
tagttatgctttcattaacggaatcgaagttgtgtcgatgccttcttttctctattacacaaacc-cagatgacctaaattattatttcaaattaattgg |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| | ||||| | |||| ||| ||| |
|
|
| T |
4644203 |
tagttatgctttcattaacggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcag-tgaccaagattatcgtatcaagttagatgg |
4644105 |
T |
|
| Q |
165 |
ctttgacaacagcgaatacgaaattcgtaatgataaagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaaaccaagataca |
264 |
Q |
| |
|
|| ||| | | |||| |||||| |||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
4644104 |
ctctgaagatataccataccaaattcttaatgacaaagctttggagatggtttatagagtcaacgttggtcgaattcaagttccaccaaaccaagataca |
4644005 |
T |
|
| Q |
265 |
ggtatgt |
271 |
Q |
| |
|
||||||| |
|
|
| T |
4644004 |
ggtatgt |
4643998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 4654041 - 4653928
Alignment:
| Q |
17 |
agaagctaaacataactttcattcccaacaacacaaaccaattgaatcctagttatgctttcattaacggaatcgaagttgtgtcgatgccttcttttct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
4654041 |
agaagctaaacataactttcattcccaacaacacaaaccattcaaatccttattatgctttcattaatggaattgaagttgtgtctatgccttcttttct |
4653942 |
T |
|
| Q |
117 |
ctattacacaaacc |
130 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
4653941 |
ctattactcaaacc |
4653928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 4864486 - 4864233
Alignment:
| Q |
1 |
caaatcaacccaaatgagaagctaaacataactttcattcc---caacaacacaaaccaattgaatcctagttatgctttcattaacggaatcgaagttg |
97 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||| || | ||| |||| |||||| |||||| |||||||| ||||| ||||| | |
|
|
| T |
4864486 |
caaatcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaatggaatagaagtcg |
4864387 |
T |
|
| Q |
98 |
tgtcgatgccttcttttctctattacacaaacccagatgacctaaattattatttcaaattaattggctttgacaacagcgaa-tacgaaattcgtaatg |
196 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||| |||||| ||| |||||||| |||| | ||| ||||||||||| |||| ||| || ||| ||| | |
|
|
| T |
4864386 |
tgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaaca-cgaactaccaagttcttaacg |
4864288 |
T |
|
| Q |
197 |
ataaagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccacc |
251 |
Q |
| |
|
| ||||| || |||| ||||||||||||||| || ||| ||| |||||||||||| |
|
|
| T |
4864287 |
acaaagcgttagagacggtttatagagtcaatgtcggtgaaagtcaagttccacc |
4864233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 4667484 - 4667252
Alignment:
| Q |
16 |
gagaagctaaacataactttcattcccaacaacacaaaccaattgaatcctagttatgctttcattaacggaatcgaagttgtgtcgatgccttcttttc |
115 |
Q |
| |
|
||||| ||| || |||||||||||||||| |||||||||||||| ||| || | ||||||||| |||||||| || ||||||| ||||| ||||||| |
|
|
| T |
4667484 |
gagaaactagacgtaactttcattcccaaaaacacaaaccaattaaatgct---tttgctttcatcaacggaattgagattgtgtctatgccgtcttttc |
4667388 |
T |
|
| Q |
116 |
tctattacacaaacc-cagatgacctaaattattatttcaaattaattggctttgacaacagcgaatacgaaattcgtaatgataaagctttggagatgg |
214 |
Q |
| |
|
||||||||||||||| ||| ||||| ||||||| |||| | |||| ||| |||||||| || |||||| | |||| ||| | |||||| |||||| || |
|
|
| T |
4667387 |
tctattacacaaacctcag-tgacccaaattatcatttgacattacttgactttgacagcaatgaataccatattcctaacaacaaagctatggagacgg |
4667289 |
T |
|
| Q |
215 |
tttatagagtcaacgttggtcaaaatcaagttccacc |
251 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
4667288 |
tttatagagtcagcgttggtgaaagtcaagttccacc |
4667252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 4631482 - 4631218
Alignment:
| Q |
10 |
ccaaatgagaagctaaacataactttcattcccaacaa------cacaaaccaattgaatcctagttatgctttcattaacggaatcgaagttgtgtcga |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||||||| ||| ||| |||||||| |||||||| || ||||||| | |
|
|
| T |
4631482 |
ccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatg---gtttagctttcatcaacggaattgagattgtgtcta |
4631386 |
T |
|
| Q |
104 |
tgccttcttttctctattacacaaacc-cagatgacctaaattattatttcaaattaattggctttgacaacagcgaatacgaaattcgtaatgataaag |
202 |
Q |
| |
|
|||||||||||||||||||||| || | ||| |||| || || |||| || || ||| ||||||| | | |||||| | |||| ||| | |||| |
|
|
| T |
4631385 |
tgccttcttttctctattacactaatctcag-tgacacgaactaccatttaaagatacttgattttgacagcggtgaataccagattcttaacaacaaag |
4631287 |
T |
|
| Q |
203 |
ctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatgt |
271 |
Q |
| |
|
|| |||| | |||||||||||||||| |||| ||||||||||||||||||| | ||||||||||||| |
|
|
| T |
4631286 |
ctatggaaacagtttatagagtcaacgctggtgaaaatcaagttccaccaaattatgatacaggtatgt |
4631218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 4653883 - 4653819
Alignment:
| Q |
199 |
aaagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatac |
263 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
4653883 |
aaagctctggagacagtttatagtgtcaacgttggtgaaaatcaagttccaccaaacctagatac |
4653819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 4644246 - 4644214
Alignment:
| Q |
11 |
caaatgagaagctaaacataactttcattccca |
43 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
4644246 |
caaatgagaagctaaacataactttcattccca |
4644214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 69 - 250
Target Start/End: Original strand, 18925344 - 18925525
Alignment:
| Q |
69 |
ttatgctttcattaacggaatcgaagttgtgtcgatgccttcttttctctattacacaaacccagatgacctaaattattatttcaaattaattggcttt |
168 |
Q |
| |
|
|||||||||||| |||||||| || | ||||| |||||||||||||||||||||||||||| ||||| |||| || |||| || ||| ||||| || |
|
|
| T |
18925344 |
ttatgctttcatcaacggaattgagatcgtgtccatgccttcttttctctattacacaaacctcaatgactcaaatcatcatttaaagttacttggcctt |
18925443 |
T |
|
| Q |
169 |
gacaacagcgaatacgaaattcgtaatgataaagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccac |
250 |
Q |
| |
|
|| |||| ||||| |||| | | ||| |||| || |||| |||||||||||||| ||||||| | ||||||||||||| |
|
|
| T |
18925444 |
gaaaacatgaaatacaaaatcagcagtgacaaagtgttagagacggtttatagagtcagcgttggtgataatcaagttccac |
18925525 |
T |
|
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