View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5689_high_62 (Length: 244)

Name: NF5689_high_62
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5689_high_62
NF5689_high_62
[»] chr3 (20 HSPs)
chr3 (13-235)||(47414159-47414381)
chr3 (24-235)||(5160222-5160433)
chr3 (18-231)||(46479732-46479945)
chr3 (1-226)||(45883710-45883935)
chr3 (3-231)||(46483975-46484203)
chr3 (3-222)||(51943817-51944036)
chr3 (18-232)||(45902896-45903110)
chr3 (58-231)||(46473911-46474084)
chr3 (18-221)||(5156187-5156390)
chr3 (68-231)||(46490701-46490864)
chr3 (18-231)||(46526395-46526608)
chr3 (58-231)||(46497930-46498103)
chr3 (68-237)||(46236761-46236930)
chr3 (82-231)||(47397278-47397427)
chr3 (66-223)||(16025471-16025628)
chr3 (3-184)||(46549004-46549185)
chr3 (3-108)||(4613932-4614037)
chr3 (58-202)||(46531901-46532045)
chr3 (3-49)||(46538912-46538958)
chr3 (135-212)||(46554173-46554250)
[»] chr4 (3 HSPs)
chr4 (3-231)||(35155345-35155573)
chr4 (3-205)||(35162366-35162567)
chr4 (3-222)||(15555939-15556158)
[»] chr8 (3 HSPs)
chr8 (63-231)||(9692688-9692856)
chr8 (63-231)||(9675666-9675834)
chr8 (1-51)||(21464340-21464390)
[»] chr2 (3 HSPs)
chr2 (62-230)||(20359113-20359281)
chr2 (62-220)||(20144603-20144761)
chr2 (66-230)||(20169003-20169167)
[»] chr7 (2 HSPs)
chr7 (76-214)||(17735927-17736065)
chr7 (134-214)||(17745165-17745245)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 47414381 - 47414159
Alignment:
Q  13 ttcataatggaagctcagtcaaggttcccttcatgaccaatggagagaagcagtttattggagcttttgatgattttaaagttctttgtcttccttataa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  47414381 ttcataatggaagctcagtcaaggttcccttcatgaccaatggagagaagcagtttattggagcttttgatgattttaaagttctttgccttccttataa 47414282  T
Q  113 caaaggagaagatacgcggaaattctctatgtacatttttcttccaaacgcaagagatggactgtcagctttggttgagaaggtggcttctgaatctgag 212  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47414281 taaaggagaagatacgcggaaattctctatgtacatttttcttccaaacacaagagatggactgtcagctttggttgagaaggtggcttctgaatctgag 47414182  T
Q  213 ttactacaccacaagcttcatct 235  Q
    |||||||||||||||||||||||    
T  47414181 ttactacaccacaagcttcatct 47414159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 235
Target Start/End: Original strand, 5160222 - 5160433
Alignment:
Q  24 agctcagtcaaggttcccttcatgaccaatggagagaagcagtttattggagcttttgatgattttaaagttctttgtcttccttataacaaaggagaag 123  Q
    ||||||||||||||||||||||||||||  |  ||||| |||||||||| ||||| ||| || |||||||||||| ||||||| ||||| |||||  |||    
T  5160222 agctcagtcaaggttcccttcatgaccagcgaggagaatcagtttattgaagcttatgacgactttaaagttcttcgtcttccgtataagaaaggcaaag 5160321  T
Q  124 atacgcggaaattctctatgtacatttttcttccaaacgcaagagatggactgtcagctttggttgagaaggtggcttctgaatctgagttactacacca 223  Q
    ||| |||   |||||||||||||||||| |||||||| |||| ||||||  ||||  |||||||| ||||||||||||||||||||||||||||||||||    
T  5160322 ataagcgtccattctctatgtacattttccttccaaatgcaaaagatggcttgtcgactttggttaagaaggtggcttctgaatctgagttactacacca 5160421  T
Q  224 caagcttcatct 235  Q
    || | |||||||    
T  5160422 caggtttcatct 5160433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 46479732 - 46479945
Alignment:
Q  18 aatggaagctcagtcaaggttcccttcatgaccaatggagagaagcagtttattggagcttttgatgattttaaagttctttgtcttccttataacaaag 117  Q
    ||||| ||| ||||||||||||||||||||||||      |||||||||||||| |||||||||||| ||||||||||||  |||||||||||||  |||    
T  46479732 aatggtagcccagtcaaggttcccttcatgaccagcaagaagaagcagtttattagagcttttgatggttttaaagttctcggtcttccttataagcaag 46479831  T
Q  118 gagaagatacgcggaaattctctatgtacatttttcttccaaacgcaagagatggactgtcagctttggttgagaaggtggcttctgaatctgagttact 217  Q
    | ||||||| |||  ||||| | |||||| ||||||||||||| |||| ||||||  || |||||||||| || ||||||||||||||||||||| ||||    
T  46479832 gcgaagataagcgtcaattcaccatgtacttttttcttccaaatgcaaaagatgggttggcagctttggtcgaaaaggtggcttctgaatctgagctact 46479931  T
Q  218 acaccacaagcttc 231  Q
     || ||||||||||    
T  46479932 gcaacacaagcttc 46479945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 45883935 - 45883710
Alignment:
Q  1 acgattttcacattcataatggaagctcagtcaaggttcccttcatgaccaatggagaga-agcagtttattggagcttttgatgattttaaagttcttt 99  Q
    |||||||||| ||||||||||| || |||||||| ||||||||||||||||    ||| | | || |||||| |||||||||||| ||||||||| ||||    
T  45883935 acgattttcatattcataatggtagttcagtcaaagttcccttcatgaccagca-agaaagatcaatttattagagcttttgatggttttaaagtgcttt 45883837  T
Q  100 gtcttccttataacaaaggagaagatacgcggaaattctctatgtacatttttcttccaaacgcaagagatggactgtcagctttggttgagaaggtggc 199  Q
    || | |||||| |  |||| | ||||| |||   ||||||||||||| ||||||||||||| |||| ||||||||||||||||||||| |||||||||||    
T  45883836 gtatcccttatgagcaaggtggagataagcgtcgattctctatgtacttttttcttccaaatgcaaaagatggactgtcagctttggtcgagaaggtggc 45883737  T
Q  200 ttctgaatctgagttactacaccacaa 226  Q
    ||||||||||   ||||||||||||||    
T  45883736 ttctgaatctacattactacaccacaa 45883710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 231
Target Start/End: Original strand, 46483975 - 46484203
Alignment:
Q  3 gattttcacattcataatggaagctcagtcaaggttcccttcatgaccaatggagagaagcagtttattggagcttttgatgattttaaagttctttgtc 102  Q
    ||||||||| |||  ||||| |||||||||||||||||||| ||||| |      |||||||||||||| |||||||||||| ||||||||||||| |||    
T  46483975 gattttcaccttctcaatggcagctcagtcaaggttccctttatgactagcaagaagaagcagtttattagagcttttgatggttttaaagttcttggtc 46484074  T
Q  103 ttccttataacaaaggagaagatacgcggaaattctctatgtacatttttcttccaaacgcaagagatggactgtcagctttggttgagaaggtggcttc 202  Q
    ||||||||||  |||| ||||||| |||    ||| |||||||| ||||||||||||| |||| |||||| ||  ||  ||||||||| |||||||||||    
T  46484075 ttccttataagcaaggcgaagataagcgtcgtttcactatgtacttttttcttccaaatgcaaaagatgggcttccaagtttggttgaaaaggtggcttc 46484174  T
Q  203 tgaatctgagttactacaccacaagcttc 231  Q
    ||||| ||| |||||||| ||||||||||    
T  46484175 tgaatttgatttactacaacacaagcttc 46484203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 51943817 - 51944036
Alignment:
Q  3 gattttcacattcataatggaagctcagtcaaggttcccttcatgaccaatggagagaagcagtttattggagcttttgatgattttaaagttctttgtc 102  Q
    ||||||||| |||  ||||| ||||||||||||||||||||||||||||      ||||||||||||||| || || |||||||||||||||||||  ||    
T  51943817 gattttcaccttctaaatggtagctcagtcaaggttcccttcatgaccagcaataagaagcagtttattgaagtttatgatgattttaaagttcttcatc 51943916  T
Q  103 ttccttataacaaaggagaagatacgcggaaattctctatgtacatttttcttccaaacgcaagagatggactgtcagctttggttgagaaggtggcttc 202  Q
    |||||||||| ||||| ||||||| |||  |||||||||||||  ||||||||||||| |||| ||||||  |||||||||| ||||| || ||| | ||    
T  51943917 ttccttataagaaaggtgaagataagcgccaattctctatgtatttttttcttccaaatgcaaaagatgggttgtcagctttagttgaaaaagtgtcctc 51944016  T
Q  203 tgaatctgagttactacacc 222  Q
    |  ||||||||| |||||||    
T  51944017 tacatctgagttcctacacc 51944036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 45902896 - 45903110
Alignment:
Q  18 aatggaagctcagtcaaggttcccttcatgaccaatggagagaagcagtttattggagcttttgatgattttaaagttctttgtcttccttataacaaag 117  Q
    ||||| ||||||||||||||||||||||||||||  |   ||| |||||||||  | | ||| |||| ||| ||||| ||| ||||||||||| |  |||    
T  45902896 aatggtagctcagtcaaggttcccttcatgaccagcgagaagaggcagtttatccgcgttttcgatggtttcaaagtacttcgtcttccttatgagcaag 45902995  T
Q  118 gagaagatacgcggaaattctctatgtacatttttcttccaaacgcaagagatggactgtcagctttggttgagaaggtggcttctgaatctgagttact 217  Q
    ||||||||| |||  ||||||||||||| |||||||||||||| |||| ||||||  ||  |  ||| ||||||||||| ||||||||||||||||||||    
T  45902996 gagaagataagcgtcaattctctatgtatatttttcttccaaaagcaaaagatggtttgcaaagtttagttgagaaggtagcttctgaatctgagttact 45903095  T
Q  218 acaccacaagcttca 232  Q
    |||||||||||||||    
T  45903096 acaccacaagcttca 45903110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 46473911 - 46474084
Alignment:
Q  58 agaagcagtttattggagcttttgatgattttaaagttctttgtcttccttataacaaaggagaagatacgcggaaattctctatgtacatttttcttcc 157  Q
    |||||||||||||| |||||||||||| ||||||||||||| |||||||||||||  |||| ||||||| |||    ||| |||||||| ||||||||||    
T  46473911 agaagcagtttattagagcttttgatggttttaaagttcttggtcttccttataagcaaggcgaagataagcgtcgtttcactatgtacttttttcttcc 46474010  T
Q  158 aaacgcaagagatggactgtcagctttggttgagaaggtggcttctgaatctgagttactacaccacaagcttc 231  Q
    ||| |||| |||||| ||  ||  ||||||||| |||||||||||||||||||| |||||||| ||||||||||    
T  46474011 aaatgcaaaagatgggcttccaagtttggttgaaaaggtggcttctgaatctgatttactacaacacaagcttc 46474084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 5156187 - 5156390
Alignment:
Q  18 aatggaagctcagtcaaggttcccttcatgaccaatggagagaagcagtttattggagcttttgatgattttaaagttctttgtcttccttataacaaag 117  Q
    ||||| ||||| ||||||||||||||||||||||  |  ||||| |||||||||| ||||| || ||  |||||||||||| ||||||| ||||| ||||    
T  5156187 aatggcagctcggtcaaggttcccttcatgaccagcgaggagaatcagtttattgaagcttatggtggctttaaagttcttcgtcttccgtataaaaaag 5156286  T
Q  118 gagaagatacgcggaaattctctatgtacatttttcttccaaacgcaagagatggactgtcagctttggttgagaaggtggcttctgaatctgagttact 217  Q
    |  |||||| |||   ||||||||||||||||||||||||||| || | |||||||||| |||| |||||||||||| ||||| || || || | |||||    
T  5156287 gcaaagataagcgtcgattctctatgtacatttttcttccaaatgctaaagatggactgccagcattggttgagaagttggctgctaaacctcacttact 5156386  T
Q  218 acac 221  Q
    ||||    
T  5156387 acac 5156390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 231
Target Start/End: Original strand, 46490701 - 46490864
Alignment:
Q  68 tattggagcttttgatgattttaaagttctttgtcttccttataacaaaggagaagatacgcggaaattctctatgtacatttttcttccaaacgcaaga 167  Q
    |||| ||||||| |||||||||||||||||| | |||||||||||  |||| ||||||| |||  ||||  |||||||| ||||||||||||| |||| |    
T  46490701 tattagagctttcgatgattttaaagttcttggccttccttataagcaaggcgaagataagcgtgaatttactatgtacttttttcttccaaatgcaaaa 46490800  T
Q  168 gatggactgtcagctttggttgagaaggtggcttctgaatctgagttactacaccacaagcttc 231  Q
    ||||| ||| || ||||| |||||||| ||||||||||||| |||| |||| | ||||||||||    
T  46490801 gatgggctgccaactttgcttgagaagttggcttctgaatcggagtcactaaaacacaagcttc 46490864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 46526608 - 46526395
Alignment:
Q  18 aatggaagctcagtcaaggttcccttcatgaccaatggagagaag-cagtttattggagcttttgatgattttaaagttctttgtcttccttataacaaa 116  Q
    ||||| ||||||||||||||||||||||||||||  | |||  || || |||||  | | ||| |||| ||| ||||| ||  |||||||||||||  ||    
T  46526608 aatggcagctcagtcaaggttcccttcatgaccagcg-agaatagacaatttatcagtgttttcgatggtttcaaagtactccgtcttccttataagcaa 46526510  T
Q  117 ggagaagatacgcggaaattctctatgtacatttttcttccaaacgcaagagatggactgtcagctttggttgagaaggtggcttctgaatctgagttac 216  Q
    |||||||||| |||  |||||||||||||||||||||||||||  |||||||||||  || || ||||  | |||||||| ||||||||| |||||||||    
T  46526509 ggagaagataagcgtcaattctctatgtacatttttcttccaagagcaagagatggtttgccaactttaatcgagaaggtagcttctgaacctgagttac 46526410  T
Q  217 tacaccacaagcttc 231  Q
    |||||||||| ||||    
T  46526409 tacaccacaaccttc 46526395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 46497930 - 46498103
Alignment:
Q  58 agaagcagtttattggagcttttgatgattttaaagttctttgtcttccttataacaaaggagaagatacgcggaaattctctatgtacatttttcttcc 157  Q
    |||||||||||||| ||| ||| |||||||||||||||||| | |||||||||||  |||| ||||| | |||  ||||  | |||||| ||||||||||    
T  46497930 agaagcagtttattagagatttcgatgattttaaagttcttggccttccttataagcaaggcgaagacaagcgtcaatttacgatgtacttttttcttcc 46498029  T
Q  158 aaacgcaagagatggactgtcagctttggttgagaaggtggcttctgaatctgagttactacaccacaagcttc 231  Q
    ||| |||| |||||| ||| || ||||| |||||||| | ||||| |||||||||||||| || ||||||||||    
T  46498030 aaatgcaaaagatgggctgccaactttgcttgagaagcttgcttccgaatctgagttactgcaacacaagcttc 46498103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 237
Target Start/End: Complemental strand, 46236930 - 46236761
Alignment:
Q  68 tattggagcttttgatgattttaaagttctttgtcttccttataacaaaggagaagatacgcggaaattctctatgtacatttttcttccaaacgcaaga 167  Q
    |||||||| |||||||| || ||||||||||| ||||||||||||  ||||  |||||  | |  ||||||||||||| |||||||||||| | |||| |    
T  46236930 tattggagattttgatggttataaagttctttatcttccttataatcaaggcaaagatgagtgtcaattctctatgtatatttttcttccagatgcaaaa 46236831  T
Q  168 gatggactgtcagctttggttgagaaggtggcttctgaatctgagttactacaccacaagcttcatctca 237  Q
    |||||  ||||| | |||||||||||| |||||||||||| |||||||| | | ||||| |||| |||||    
T  46236830 gatgggttgtcaaccttggttgagaagctggcttctgaatttgagttaccagaacacaatcttcctctca 46236761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 231
Target Start/End: Complemental strand, 47397427 - 47397278
Alignment:
Q  82 atgattttaaagttctttgtcttccttataacaaaggagaagatacgcggaaattctctatgtacatttttcttccaaacgcaagagatggactgtcagc 181  Q
    ||||||| ||||| ||| ||||| ||||||   |||| ||||||| |||  | ||||| |||||||||||||||||||| |||| ||||||| || |||     
T  47397427 atgatttcaaagtacttcgtctttcttataggcaaggtgaagataagcgccatttctccatgtacatttttcttccaaatgcaaaagatggattgacaga 47397328  T
Q  182 tttggttgagaaggtggcttctgaatctgagttactacaccacaagcttc 231  Q
    ||||||||||||  |||||||| ||| |||||||||| | ||||| ||||    
T  47397327 tttggttgagaacatggcttctaaatttgagttactagaacacaatcttc 47397278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 223
Target Start/End: Original strand, 16025471 - 16025628
Alignment:
Q  66 tttattggagcttttgatgattttaaagttctttgtcttccttataacaaaggagaagatacgcggaaattctctatgtacatttttcttccaaacgcaa 165  Q
    |||||| | ||||| |||||||| ||||| ||| ||||||| || |   |||| ||||||| |||  |||| |  |||||  ||||||||||||| | ||    
T  16025471 tttatttgtgctttcgatgatttcaaagtacttcgtcttccatacagacaaggtgaagataagcgtcaattttgaatgtatttttttcttccaaatgaaa 16025570  T
Q  166 gagatggactgtcagctttggttgagaaggtggcttctgaatctgagttactacacca 223  Q
    ||||||||||||| |||||| |||||| |||||||||| |||| ||| ||||||||||    
T  16025571 gagatggactgtctgctttgattgagagggtggcttctcaatccgaggtactacacca 16025628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 184
Target Start/End: Complemental strand, 46549185 - 46549004
Alignment:
Q  3 gattttcacattcataatggaagctcagtcaaggttcccttcatgaccaatggagagaagcagtttattggagcttttgatgattttaaagttctttgtc 102  Q
    ||||||||| |||  ||||| ||||| ||||||||||||||||| ||||   |  |  | ||||||||  | | |||||||| ||| |||||||||| ||    
T  46549185 gattttcaccttctcaatggcagctcggtcaaggttcccttcataaccagcaggaatgatcagtttatcagtgtttttgatggtttcaaagttctttatc 46549086  T
Q  103 ttccttataacaaaggagaagatacgcggaaattctctatgtacatttttcttccaaacgcaagagatggactgtcagcttt 184  Q
    ||||||||||  ||||| ||||||  ||  |||||||||||||| |||||||||||||  ||| ||||||||| ||| ||||    
T  46549085 ttccttataaataaggaaaagataaacgacaattctctatgtacttttttcttccaaatacaaaagatggactctcatcttt 46549004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 4614037 - 4613932
Alignment:
Q  3 gattttcacattcataatggaagctcagtcaaggttcccttcatgaccaatggagagaagcagtttattggagcttttgatgattttaaagttctttgtc 102  Q
    |||||||| ||||| ||| | | ||| || ||||||||||||||||| | | | ||| |||||||||| || | |||||||||||||||  ||||| |||    
T  4614037 gattttcatattcagaattgcaactctgttaaggttcccttcatgactagttgtgaggagcagtttatcggtgtttttgatgattttaagattcttcgtc 4613938  T
Q  103 ttcctt 108  Q
    ||||||    
T  4613937 ttcctt 4613932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 202
Target Start/End: Original strand, 46531901 - 46532045
Alignment:
Q  58 agaagcagtttattggagcttttgatgattttaaagttctttgtcttccttataacaaaggagaagatacgcggaaattctctatgtacatttttcttcc 157  Q
    |||||||||||||    |||||||||| ||||||  | ||| |||||||||||||  ||||  | ||||  ||  |||||||||||||| ||||||||||    
T  46531901 agaagcagtttataaatgcttttgatggttttaagatccttcgtcttccttataagcaaggcaacgatattcgtcaattctctatgtacttttttcttcc 46532000  T
Q  158 aaacgcaagagatggactgtcagctttggttgagaaggtggcttc 202  Q
      | |||  ||||||| ||| ||||||| ||||||| ||||||||    
T  46532001 cgatgcacaagatggattgttagctttgattgagaaagtggcttc 46532045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 46538912 - 46538958
Alignment:
Q  3 gattttcacattcataatggaagctcagtcaaggttcccttcatgac 49  Q
    |||||| || ||| |||||| ||||||||||||||||||||||||||    
T  46538912 gattttaaccttcttaatggcagctcagtcaaggttcccttcatgac 46538958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 46554250 - 46554173
Alignment:
Q  135 ttctctatgtacatttttcttccaaacgcaagagatggactgtcagctttggttgagaaggtggcttctgaatctgag 212  Q
    |||||||||||| |||| |||||  | |||| ||||||  ||||||||||| ||||||| |||||||| |||| ||||    
T  46554250 ttctctatgtactttttacttcccgatgcaaaagatgggttgtcagctttgattgagaaagtggcttcggaatatgag 46554173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 3 - 231
Target Start/End: Original strand, 35155345 - 35155573
Alignment:
Q  3 gattttcacattcataatggaagctcagtcaaggttcccttcatgaccaatggagagaagcagtttattggagcttttgatgattttaaagttctttgtc 102  Q
    ||||||||| |||  ||||| ||||||||||||||||||||||||||||   |     | || |||||| |||||||||||| ||||||||||||| |||    
T  35155345 gattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagcagccttgatcaatttattagagcttttgatggttttaaagttcttcgtc 35155444  T
Q  103 ttccttataacaaaggagaagatacgcggaaattctctatgtacatttttcttccaaacgcaagagatggactgtcagctttggttgagaaggtggcttc 202  Q
    |||| |||||  ||||| |||||  ||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||    
T  35155445 ttccgtataagcaaggaaaagatgagcggaaattctctatgtacatttttcttccaaatgcaaaagatggactatcagctttggttgagaaggtggcttc 35155544  T
Q  203 tgaatctgagttactacaccacaagcttc 231  Q
    ||||| |||||| ||| | ||||||||||    
T  35155545 tgaatttgagttgctagagcacaagcttc 35155573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 205
Target Start/End: Original strand, 35162366 - 35162567
Alignment:
Q  3 gattttcacattcataatggaagctcagtcaaggttcccttcatgaccaatggagagaagcagtttattggagcttttgatgattttaaagttctttgtc 102  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||| |         | ||||||||| |||||||||||| ||||||||||||| |||    
T  35162366 gattttcaccttctgaatggaagctcagtcaaggttcccttcatgactaccaaccttgatcagtttattagagcttttgatggttttaaagttcttcgtc 35162465  T
Q  103 ttccttataacaaaggagaagatacgcggaaattctctatgtacatttttcttccaaacgcaagagatggactgtcagctttggttgagaaggtggcttc 202  Q
    ||||||||||  ||||| |||||  |||||||||||||||||||| |||||||||||| |||| |||||| |||||||||||||||||||||||||||||    
T  35162466 ttccttataagcaaggaaaagatgagcggaaattctctatgtaca-ttttcttccaaatgcaaaagatggcctgtcagctttggttgagaaggtggcttc 35162564  T
Q  203 tga 205  Q
    |||    
T  35162565 tga 35162567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 15555939 - 15556158
Alignment:
Q  3 gattttcacattcataatggaagctcagtcaaggttcccttcatgaccaatggagagaagcagtttattggagcttttgatgattttaaagttctttgtc 102  Q
    ||||||||| |||  ||||| |||||| |||||||||| || |||| ||    |||| | || | |||||| |||||||||| ||| ||||| |||||||    
T  15555939 gattttcaccttctcaatggtagctcactcaaggttccgtttatgagcagcaaagaggatcaatatattggtgcttttgatggtttcaaagtactttgtc 15556038  T
Q  103 ttccttataacaaaggagaagatacgcggaaattctctatgtacatttttcttccaaacgcaagagatggactgtcagctttggttgagaaggtggcttc 202  Q
    ||| ||||||  ||||  || ||   ||   ||||||||| ||| || |||||||| | |||| ||||||||| || ||||||||||| |||||||||||    
T  15556039 ttcattataaacaaggccaatatgatcgccgattctctatctactttattcttccagatgcaaaagatggactctcggctttggttgaaaaggtggcttc 15556138  T
Q  203 tgaatctgagttactacacc 222  Q
     |||||||||||||||||||    
T  15556139 agaatctgagttactacacc 15556158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 9692856 - 9692688
Alignment:
Q  63 cagtttattggagcttttgatgattttaaagttctttgtcttccttataacaaaggagaagatacgcggaaattctctatgtacatttttcttccaaacg 162  Q
    ||||||||| |||||||||||| ||||||||||||| |||||||||||||  ||||| || ||| |||  |||||||||||||||||||||||||||| |    
T  9692856 cagtttattagagcttttgatggttttaaagttcttcgtcttccttataattaaggaaaaaataagcgacaattctctatgtacatttttcttccaaatg 9692757  T
Q  163 caagagatggactgtcagctttggttgagaaggtggcttctgaatctgagttactacaccacaagcttc 231  Q
    ||| ||||| ||| | |||| |||||||||| ||||||||||||| |||||| ||| | ||||||||||    
T  9692756 caaaagatgtactattagctatggttgagaaagtggcttctgaatttgagttcctagagcacaagcttc 9692688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 9675834 - 9675666
Alignment:
Q  63 cagtttattggagcttttgatgattttaaagttctttgtcttccttataacaaaggagaagatacgcggaaattctctatgtacatttttcttccaaacg 162  Q
    ||||||||| |||||||||||| ||||||||| |||||||| |||||| |  |||| | ||||| |||  |||||||||||||||||||||||||||| |    
T  9675834 cagtttattagagcttttgatggttttaaagtgctttgtctcccttatgagcaaggtggagataagcgacaattctctatgtacatttttcttccaaatg 9675735  T
Q  163 caagagatggactgtcagctttggttgagaaggtggcttctgaatctgagttactacaccacaagcttc 231  Q
    ||| || |||||| || ||| ||||||| |||||||||||||||| |||||| ||| | | ||||||||    
T  9675734 caaaaggtggactatcggctatggttgaaaaggtggcttctgaatttgagttcctagagcccaagcttc 9675666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 21464390 - 21464340
Alignment:
Q  1 acgattttcacattcataatggaagctcagtcaaggttcccttcatgacca 51  Q
    ||||||||||||||| |||||| ||| | ||||||||||| ||||||||||    
T  21464390 acgattttcacattcttaatggtagcccggtcaaggttcctttcatgacca 21464340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 230
Target Start/End: Original strand, 20359113 - 20359281
Alignment:
Q  62 gcagtttattggagcttttgatgattttaaagttctttgtcttccttataacaaaggagaagatacgcggaaattctctatgtacatttttcttccaaac 161  Q
    ||||||||||| ||||| ||| | || |||||||||| ||||||||||||| |||||  ||||||||||  ||||||||||||| |||||| | ||||||    
T  20359113 gcagtttattgaagcttatgacggttctaaagttcttcgtcttccttataaaaaaggtcaagatacgcgtcaattctctatgtatatttttttgccaaac 20359212  T
Q  162 gcaagagatggactgtcagctttggttgagaaggtggcttctgaatctgagttactacaccacaagctt 230  Q
    |||| |||||||||| ||||||| ||||||||| || ||||| ||| ||| ||||||||| | ||||||    
T  20359213 gcaaaagatggactgccagctttagttgagaagatgacttctaaatatgaattactacacgaaaagctt 20359281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 62 - 220
Target Start/End: Original strand, 20144603 - 20144761
Alignment:
Q  62 gcagtttattggagcttttgatgattttaaagttctttgtcttccttataacaaaggagaagatacgcggaaattctctatgtacatttttcttccaaac 161  Q
    ||||||||||| ||||| ||| | || |||||||||| ||||||||||||| |||||  ||||||||||  ||||||||||||| |||||| | || |||    
T  20144603 gcagtttattgaagcttatgacggttctaaagttcttcgtcttccttataaaaaaggtcaagatacgcgtcaattctctatgtatatttttttgcctaac 20144702  T
Q  162 gcaagagatggactgtcagctttggttgagaaggtggcttctgaatctgagttactaca 220  Q
    |||| |||||||||| ||||||| ||||||||| || ||||| ||| ||| ||||||||    
T  20144703 gcaaaagatggactgccagctttagttgagaagatgacttctaaatatgaattactaca 20144761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 230
Target Start/End: Complemental strand, 20169167 - 20169003
Alignment:
Q  66 tttattggagcttttgatgattttaaagttctttgtcttccttataacaaaggagaagatacgcggaaattctctatgtacatttttcttccaaacgcaa 165  Q
    ||||||| ||||| ||| | || |||||||||| ||||||||||||| |||||  ||||||||||  ||||||||||||| |||||| | ||||||||||    
T  20169167 tttattgaagcttatgacggttctaaagttcttcgtcttccttataaaaaaggtcaagatacgcgtcaattctctatgtatatttttttgccaaacgcaa 20169068  T
Q  166 gagatggactgtcagctttggttgagaaggtggcttctgaatctgagttactacaccacaagctt 230  Q
     |||||||||| ||||||| ||||||||| || ||||  ||| ||| ||||||||| | ||||||    
T  20169067 aagatggactgccagctttagttgagaagatgacttcaaaatatgaattactacacgaaaagctt 20169003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 214
Target Start/End: Original strand, 17735927 - 17736065
Alignment:
Q  76 cttttgatgattttaaagttctttgtcttccttataacaaaggagaagatacgcggaaattctctatgtacatttttcttccaaacgcaagagatggact 175  Q
    ||||||||| ||||||||| ||| |||||||||| ||  ||||  | |||| |||   ||||||||| ||| ||||||||||  ||| || ||||||  |    
T  17735927 cttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcctgacgaaaaagatgggtt 17736026  T
Q  176 gtcagctttggttgagaaggtggcttctgaatctgagtt 214  Q
    |||||||||| |||| || || |||||||| ||||||||    
T  17736027 gtcagctttgattgataaagtagcttctgattctgagtt 17736065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 17745165 - 17745245
Alignment:
Q  134 attctctatgtacatttttcttccaaacgcaagagatggactgtcagctttggttgagaaggtggcttctgaatctgagtt 214  Q
    ||||||||| ||| ||||||||||  ||| || ||||||  ||||||||||| |||| || || |||||||| ||||||||    
T  17745165 attctctatttacttttttcttcctgacgaaaaagatggtttgtcagctttgattgataaagtagcttctgattctgagtt 17745245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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