View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_high_64 (Length: 238)
Name: NF5689_high_64
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_high_64 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 36676594 - 36676372
Alignment:
| Q |
1 |
ataacactcaaaactttcatgcttcaccttctgtgaacacagttattcgtccgaaaaggcgaagagctagaagcaggaaaaacaaagaagaaattgagaa |
100 |
Q |
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| T |
36676594 |
ataacactcaaaactttcatgcttcaccttctgtgaacacagttattcgtccaaaaaggcgaagagctagaagcaggaaaaacaaagaagaaattgagaa |
36676495 |
T |
|
| Q |
101 |
tcagagaatgactcacattgctgttgagcgtaatagaagaaagcagatgaatgagtatctttctattcttcgctctctaatgccagattctcacatccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676494 |
tcagagaatgactcacattgctgttgagcgtaatagaagaaagcagatgaatgagtatctttctattcttcgctctctaatgccagattctcacatccaa |
36676395 |
T |
|
| Q |
201 |
agggtacttactacttactactt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
36676394 |
agggtacttactacttactactt |
36676372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 46921817 - 46921939
Alignment:
| Q |
87 |
gaagaaattgagaatcagagaatgactcacattgctgttgagcgtaatagaagaaagcagatgaatgagtatctttctattcttcgctctctaatgccag |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||| || || || || |||||||| |||||||||||||| ||| ||||| | ||||| ||||| | |
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| T |
46921817 |
gaagaaattgagaatcagagaatgactcacattgctgtagaacgcaacaggagaaagcaaatgaatgagtatctctctgttcttagatctctcatgcctg |
46921916 |
T |
|
| Q |
187 |
attctcacatccaaagggtactt |
209 |
Q |
| |
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| || || |||||||||||||| |
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| T |
46921917 |
aatcctacgtccaaagggtactt |
46921939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 27301008 - 27300928
Alignment:
| Q |
77 |
gaaaaacaaagaagaaattgagaatcagagaatgactcacattgctgttgagcgtaatagaagaaagcagatgaatgagta |
157 |
Q |
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||||||||| || ||||| |||| ||||| |||||||||||||| |||||||| ||| ||||||| |||||||||||||| |
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| T |
27301008 |
gaaaaacaaggaggaaatcgagagccagaggatgactcacattgcagttgagcgcaatcgaagaaaacagatgaatgagta |
27300928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 136
Target Start/End: Complemental strand, 8873385 - 8873343
Alignment:
| Q |
94 |
ttgagaatcagagaatgactcacattgctgttgagcgtaatag |
136 |
Q |
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|||||||||| |||||||| |||||||||||||| |||||||| |
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| T |
8873385 |
ttgagaatcaaagaatgacacacattgctgttgaacgtaatag |
8873343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 45672850 - 45672774
Alignment:
| Q |
81 |
aacaaagaagaaattgagaatcagagaatgactcacattgctgttgagcgtaatagaagaaagcagatgaatgagta |
157 |
Q |
| |
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|||||||| || ||||| ||||| || |||||||| ||| ||||||| || ||| ||||||| || ||||||||||| |
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| T |
45672850 |
aacaaagaggagattgaaaatcaaaggatgactcatattactgttgaacgcaatcgaagaaaacaaatgaatgagta |
45672774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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