View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_high_65 (Length: 238)
Name: NF5689_high_65
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_high_65 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8624828 - 8625041
Alignment:
| Q |
1 |
ttaatggtgagatttatttatccaatcgtgaaaactagatgcacgacttgtctcacttgtgcacctagaatcgacctataccttacaatctatttctcaa |
100 |
Q |
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| T |
8624828 |
ttaatggtgagatttatttatccaatcata-----tagatgcaagacttgtctcacttgtgcacctagaatcgaccta--ccttacaatctatttctcaa |
8624920 |
T |
|
| Q |
101 |
taatgcaaggttgttggggtatgaactgatgagttcttttgtcctgaattatctatttaacataagaaaattaaagaatatatattttatacattgacat |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8624921 |
taacgcaaggttgttggggtatgaactgatgagttcttttgtcctgaattatctatttaacataagaaaattaaagaatatatattttatacatcgacat |
8625020 |
T |
|
| Q |
201 |
tgaaaaactttatactgaatt |
221 |
Q |
| |
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||||||||||| ||||||||| |
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| T |
8625021 |
tgaaaaactttttactgaatt |
8625041 |
T |
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