View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_high_69 (Length: 236)
Name: NF5689_high_69
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_high_69 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 7085034 - 7084814
Alignment:
| Q |
1 |
tactgttacttttgtacaactacctagttgaacattactatgatgtatctggattaactttatgttcaaataagctataattgagcttctaaattttgcc |
100 |
Q |
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| T |
7085034 |
tactgttacttttgtacaactacctagttgaacattactatgatgtatctagattaactttatgttcaaataagctataattgagcttctaaattttgcc |
7084935 |
T |
|
| Q |
101 |
ggcttaatgtgtgtag-aattttaagtattcacggtgtttccgtgtgggtgggtggaggccacataaaaccaacaaacataatttggatccactccttac |
199 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7084934 |
ggcttaatgtgtgtagaaattttaagtattcacggtgtttccgtgtgggtgggcagaggccacataaaaccaacaaacataatttggatccactccttcc |
7084835 |
T |
|
| Q |
200 |
acaaagagaaattatatattt |
220 |
Q |
| |
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|||||||||||| |||||||| |
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| T |
7084834 |
acaaagagaaatgatatattt |
7084814 |
T |
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