View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_high_7 (Length: 519)
Name: NF5689_high_7
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 482; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 18 - 507
Target Start/End: Complemental strand, 46632772 - 46632283
Alignment:
| Q |
18 |
caaatgaatcaggcctttgttttggtgcactttgtgatctaactttagctcttgatgattctgtattagccatgtaacttggatacaaagggtagtcata |
117 |
Q |
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| T |
46632772 |
caaatgaatcaggcctttgttttggtgcactttgtgatctaactttagctcttgatgattctgtattagccatgtaacttggatacaaagggtagtcata |
46632673 |
T |
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| Q |
118 |
ggacatttgttctgcataagatggcctagggaaagcaaaagggtgatttgattcatctgtttttgatatagcagaatagcattgaggactgctttgagct |
217 |
Q |
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| T |
46632672 |
ggacatttgttctgcataagatggcctagggaaagcaaaagggtgatttgattcatctgtttttgatatagcagaatagcattgaggactgctttgagct |
46632573 |
T |
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| Q |
218 |
gtactgaagcaatcctcaaaatggccactgcatgcttttggactcaattctgttaaagctgatggagctggtgatactttgtagttttcttctttcgtgt |
317 |
Q |
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| T |
46632572 |
gtactgaagcaatcctcaaaatggccactgcatgcttttggactcaattctgttaaagctgatggagctggtgatactttgtagttttcttctttcgtat |
46632473 |
T |
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| Q |
318 |
aggaaccatttatggaatatctattttcagattgctcataatgttgtctatttacactgctgcttctgcttgtagagttgccttttgattcacaaaaatc |
417 |
Q |
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| T |
46632472 |
aggaaccatttatggaatatctattttcagattgctcataatgttgtctatttacactgctgcttctgcttgtagagttgccttttgattcacaaaaatc |
46632373 |
T |
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| Q |
418 |
catctccacaattttgatgttgtcttccaagcctctgtccatttcctacatgcacaaaaccgaatttcatgactataactacttcatatt |
507 |
Q |
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| T |
46632372 |
catctccacaattttgatgttgtcttccaagcctctgtccatttcctacatgcacaaaaccgaatttcatgactagaactacttcatatt |
46632283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 29 - 297
Target Start/End: Complemental strand, 15507054 - 15506783
Alignment:
| Q |
29 |
ggcctttgttttggtgcactttgtgatctaactttagctcttgatgattctgtattagccatgtaacttggatacaaagggtagtcataggacatttgtt |
128 |
Q |
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| T |
15507054 |
ggcctttgcttcggtgcactttgtgatctgactttagctcttgatgattctgtgttagccatgtaatttggaaataatggatagtcattgggaatggatt |
15506955 |
T |
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| Q |
129 |
ctgcataagatggcctagggaaagcaaaagggtgatttgattcatctgtttttgatatagcagaatagcattgaggactgctttgagctgtactga---a |
225 |
Q |
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| T |
15506954 |
cttcataggattgtctagtgaaagcaaaaggaagctttgaattatctactcttgaaacagctgagtagtaatagggactgttctgtgctgtactgaggga |
15506855 |
T |
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| Q |
226 |
gcaatcctcaaaatggccactgcatgcttttggactcaattctgttaaagctgatggagctggtgatacttt |
297 |
Q |
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| T |
15506854 |
acaatcctcaaaatgtccactgcatgctcttgggcttgaatctgttagtgctgatggtgttggtgattcttt |
15506783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 45768313 - 45768377
Alignment:
| Q |
30 |
gcctttgttttggtgcactttgtgatctaactttagctcttgatgattctgtattagccatgtaa |
94 |
Q |
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| T |
45768313 |
gcctttgtcttggtgcactttgtgatctaaccttagctctagaagattcagtgtttgccatgtaa |
45768377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 295 - 428
Target Start/End: Complemental strand, 11979843 - 11979706
Alignment:
| Q |
295 |
tttgtagttttcttctttcgtgtaggaaccatttatggaatatctattttcagattgctcataatgt---tgtctatt-tacactgctgcttctgcttgt |
390 |
Q |
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| T |
11979843 |
tttgtatttttcttcttttgagtaggaaccatttgtggaatatctatgttcaaattgttcataatgtccatttgtaatatacactgttgcttctgcttgc |
11979744 |
T |
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| Q |
391 |
agagttgccttttgattcacaaaaatccatctccacaa |
428 |
Q |
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| T |
11979743 |
agaattaccatttgattcacaaaaatccatctccacaa |
11979706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 42635355 - 42635284
Alignment:
| Q |
28 |
aggcctttgttttggtgcactttgtgatctaactttagctcttgatgattctgtattagccatgtaacttgg |
99 |
Q |
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| T |
42635355 |
aggcctttgttttggtgcactcagagatctaactttggcctttgccgactctgtataagccatgtaacttgg |
42635284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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