View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_high_70 (Length: 236)
Name: NF5689_high_70
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_high_70 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 15)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4680543 - 4680330
Alignment:
| Q |
1 |
acaccactgtctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4680543 |
acaccactgtctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatga |
4680444 |
T |
|
| Q |
101 |
atcctgatatatgtaggaacatatatattaagataacttcaactagaataattattatttgtaacaaatatgtgacatatataaagcagctgtatacaaa |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4680443 |
atcctgatatatgtaggaac----atattaagataacttcaactagaata---attatttgtaacaaatatgtgacatatataaagcagctgtatacaaa |
4680351 |
T |
|
| Q |
201 |
ttcatttgacaaacctgattg |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
4680350 |
ttcatttgacaaacctgattg |
4680330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 4777485 - 4777593
Alignment:
| Q |
1 |
acaccactgtctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatga |
100 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||| ||| | ||||| ||| |||||||||||| | | || ||||||||| |||||||||||||||| |
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| T |
4777485 |
acaccgctatctatgaatttggcatctgaaatgtaatttaggtctgtgtccgtatcagaatagctcaaatgttcaggtagaccacaatctatgctaatga |
4777584 |
T |
|
| Q |
101 |
atcctgata |
109 |
Q |
| |
|
||||||||| |
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|
| T |
4777585 |
atcctgata |
4777593 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 4688168 - 4688071
Alignment:
| Q |
10 |
tctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatgaatcctga |
107 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| || || || |||||| ||||||||||||||||||||||| |
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| T |
4688168 |
tctatgaatttggcatctgaaatgtaatttatgcctgtgtccgtttcagaatagcttgaaagttcagatagaccacaatctatgctaatgaatcctga |
4688071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 4906008 - 4906173
Alignment:
| Q |
16 |
aatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatgaatcctgatatatgta |
115 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| | |||||||||||| | | || |||||||||||| |||| ||||||||||||||||| || || |
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| T |
4906008 |
aatttggcatctgaaatgtaatttatgcctctgcttatatcagaatagctcaaatgttcaggtagaccgcagtctaagctaatgaatcctgatacatata |
4906107 |
T |
|
| Q |
116 |
------ggaacatatatattaagataacttcaactagaataattattatttgtaacaaatatgtgacata |
179 |
Q |
| |
|
|||||| || ||||||||||||| ||| |||||| |||| | |||||||| |||||||||| |
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|
| T |
4906108 |
aatttaggaacaaat----taagataacttcagctacaataataattactagtaacaaaaatgtgacata |
4906173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 4891289 - 4891400
Alignment:
| Q |
1 |
acaccactgtctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatga |
100 |
Q |
| |
|
|||||| | |||||||||||||||||||| |||||| |||||||||| ||| ||||||| || | |||| ||||||||| ||||||| |||||||| |
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| T |
4891289 |
acaccagtatctatgaatttggcatctgatatgtaatttatgcctgtcttcgatgaagaatagttcaaattttcaggtagaccacaatctaagctaatga |
4891388 |
T |
|
| Q |
101 |
atcctgatatat |
112 |
Q |
| |
|
|||||||||||| |
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|
| T |
4891389 |
atcctgatatat |
4891400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 4725441 - 4725335
Alignment:
| Q |
1 |
acaccactgtctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatga |
100 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| ||| ||||||||||| |||| | ||||||| || | || |||||| || |||||||||||||||| |
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| T |
4725441 |
acaccagtatctatgaatttggcatctgaaatataatttatgcctgtggtcgtttgagaataggtcatatgttcaggtaggccacaatctatgctaatga |
4725342 |
T |
|
| Q |
101 |
atcctga |
107 |
Q |
| |
|
||||||| |
|
|
| T |
4725341 |
atcctga |
4725335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 4995464 - 4995367
Alignment:
| Q |
10 |
tctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatgaatcctga |
107 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||| |||||| | |||||||| || || | || ||||||||| ||||||| ||||||||||||||| |
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| T |
4995464 |
tctatgaatttggcatcagaaatgtaatttatgtgtgtgcttatatcagaataccttgaatctttaggtagaccacaatctaagctaatgaatcctga |
4995367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 10445918 - 10445821
Alignment:
| Q |
10 |
tctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatgaatcctga |
107 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||| ||||||| | | ||||||| | | |||||||||||| ||||||||||||||||||||||| |
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| T |
10445918 |
tctatgaatttggtatctgaaatgtaatttatgtatgtgctctcatgaatatagctcaaatgttgaggtagaccacaatctatgctaatgaatcctga |
10445821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 4735913 - 4735805
Alignment:
| Q |
1 |
acaccactgtctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatga |
100 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| ||| ||||||||||| | | |||||||| | | | ||||||||| |||||||||||||||| |
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|
| T |
4735913 |
acaccagtatctatgaatttggcatctgaaatataatttatgcctgtgtccaacgcagaatagtttaaatgcgcaggtagaccacaatctatgctaatga |
4735814 |
T |
|
| Q |
101 |
atcctgata |
109 |
Q |
| |
|
||||||||| |
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|
| T |
4735813 |
atcctgata |
4735805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 4744908 - 4744870
Alignment:
| Q |
10 |
tctatgaatttggcatctgaaatgtaacttatgcctgtg |
48 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4744908 |
tctatgaatttggcatctgaaatataacttatgcctgtg |
4744870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 4926184 - 4926281
Alignment:
| Q |
10 |
tctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatgaatcctga |
107 |
Q |
| |
|
|||||||||| |||||||| ||||| ||||||||||| || |||||| ||| | || |||| |||||| || ||||||||||| ||||||||||| |
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|
| T |
4926184 |
tctatgaattctgcatctgatatgtagtttatgcctgtgatcttctcagtgtagtttgaattttcaggtaggccacaatctatgctgatgaatcctga |
4926281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 4714006 - 4713907
Alignment:
| Q |
10 |
tctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgat-ttttgaggtagaccgcaatctatgctaatgaatcctgat |
108 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||| | | ||||||| | ||| | || |||||| || |||||||||||||||||||||||| |
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| T |
4714006 |
tctatgaatttggcatctgaaatataatttatgcctgtgtccaacgaagaatag-ttgatatctttaggtaggccacaatctatgctaatgaatcctgat |
4713908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 21440515 - 21440549
Alignment:
| Q |
13 |
atgaatttggcatctgaaatgtaacttatgcctgt |
47 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
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|
| T |
21440515 |
atgaatttggcatctgaaatgtaatttatgcctgt |
21440549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 4702664 - 4702627
Alignment:
| Q |
10 |
tctatgaatttggcatctgaaatgtaacttatgcctgt |
47 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
4702664 |
tctatgaatttggcctctgaaatgtaatttatgcctgt |
4702627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 4702599 - 4702563
Alignment:
| Q |
75 |
aggtagaccgcaatctatgctaatgaatcctgatata |
111 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
4702599 |
aggtagaccgcagtctaagctaatgaatcctgatata |
4702563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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