View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5689_high_78 (Length: 211)
Name: NF5689_high_78
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_high_78 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 41369566 - 41369383
Alignment:
| Q |
18 |
gaaacctcacttccgttaagttcaactgaggaagacatggatcttgttcgctcacgcaacaattttttacctgccagggataatcatcttccaagaccaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41369566 |
gaaacctcacttccgttaagttcaactgaggaagacatggatcttgttcgctcacgcaacaattttttacctgccagggataatcatcttccaagaccaa |
41369467 |
T |
|
| Q |
118 |
ttattcccattggacctagatttcaagcaaaaatacctaaatgggaaggtggaactgacataaaactaggtaatgatgatgatg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41369466 |
ttattcccattggacctagatttcaagcaaaaatacctaaatgggaaggtggaactgacataaaactaggtaatgatgatgatg |
41369383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 21 - 201
Target Start/End: Complemental strand, 24479053 - 24478873
Alignment:
| Q |
21 |
acctcacttccgttaagttcaactgaggaagacatggatcttgttcgctcacgcaacaattttttacctgccagggataatcatcttccaagaccaatta |
120 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||| ||| | ||||||||||| |||| || ||||||| |||||||||| |||| |
|
|
| T |
24479053 |
acctcacttccgttaagctcaactgaggaagacatggaacttgttcgatcattcgacaattttttaactgctagatgtaatcatattccaagacctatta |
24478954 |
T |
|
| Q |
121 |
ttcccattggacctagatttcaagcaaaaatacctaaatgggaaggtggaactgacataaaactaggtaatgatgatgatg |
201 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||| || ||||||| |
|
|
| T |
24478953 |
ttcccattggacctaggtttcaagcaaaaatacctaaatgggaagacggaacctacataaaactaggtaacgacgatgatg |
24478873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 201
Target Start/End: Original strand, 24694040 - 24694223
Alignment:
| Q |
21 |
acctcacttccgttaagttcaactgaggaag---acatggatcttgttcgctcacgcaacaattttttacctgccagggataatcatcttccaagaccaa |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||| |||||| |||||| ||||||||||||| || | ||| ||||||||| | |||||| |
|
|
| T |
24694040 |
acctcacttcagttaagttcaactgaggaagaagacatggaacttgtttgctcactcaacaattttttaactcctaggtgtaatcatctactaagacccg |
24694139 |
T |
|
| Q |
118 |
ttattcccattggacctagatttcaagcaaaaatacctaaatgggaaggtggaactgacataaaactaggtaatgatgatgatg |
201 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| |
|
|
| T |
24694140 |
ttattcccattggacctaggtttcaagtgaaaatacctaaatgggaaggtggaaccgacataaaactagataatgacgatgatg |
24694223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 24455686 - 24455616
Alignment:
| Q |
98 |
taatcatcttccaagaccaattattcccattggacctagatttcaagcaaaaatacctaaatgggaaggtg |
168 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||| || |||||||||||| | |||||||||||||||| |
|
|
| T |
24455686 |
taatcatcttccaagactagttattcccattggaccaaggtttcaagcaaaagttcctaaatgggaaggtg |
24455616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 24444351 - 24444251
Alignment:
| Q |
45 |
gaggaagacatggatcttgttcgctcacgcaacaattttttacctgccagggataatcatcttccaagaccaattattcccattggacctagatttcaag |
144 |
Q |
| |
|
||||||||||||||||| ||| ||||| ||| || ||||||||| | |||| || |||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
24444351 |
gaggaagacatggatctcattcactcactcaagaactttttaccttctaggggcaaccatcttccaagaccgtttattcccattggacctaggtttcaag |
24444252 |
T |
|
| Q |
145 |
c |
145 |
Q |
| |
|
| |
|
|
| T |
24444251 |
c |
24444251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 24413754 - 24413690
Alignment:
| Q |
81 |
tttttacctgccagggataatcatcttccaagaccaattattcccattggacctagatttcaagc |
145 |
Q |
| |
|
||||||||| | |||| ||| ||||||||||||||| |||||||||| |||||||| |||||||| |
|
|
| T |
24413754 |
tttttaccttctaggggtaaccatcttccaagaccagttattcccatcggacctaggtttcaagc |
24413690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 24428349 - 24428279
Alignment:
| Q |
93 |
agggataatcatcttccaagaccaattattcccattggacctagatttcaagcaaaaatacctaaatggga |
163 |
Q |
| |
|
|||| ||| ||||||||||||||| |||||||||| |||||||| |||||||| || | ||||||||||| |
|
|
| T |
24428349 |
aggggtaaccatcttccaagaccagttattcccatcggacctaggtttcaagctgaagttcctaaatggga |
24428279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University