View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5689_low_12 (Length: 478)

Name: NF5689_low_12
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5689_low_12
NF5689_low_12
[»] chr2 (3 HSPs)
chr2 (1-462)||(38357375-38357835)
chr2 (37-258)||(19602021-19602249)
chr2 (357-458)||(39710543-39710645)
[»] chr7 (3 HSPs)
chr7 (1-254)||(47637263-47637516)
chr7 (368-452)||(15050949-15051033)
chr7 (364-435)||(3837061-3837132)
[»] chr6 (2 HSPs)
chr6 (360-435)||(724675-724752)
chr6 (346-437)||(13692478-13692571)
[»] chr4 (1 HSPs)
chr4 (340-428)||(24418133-24418223)
[»] scaffold0022 (1 HSPs)
scaffold0022 (386-437)||(84863-84914)
[»] chr1 (2 HSPs)
chr1 (360-417)||(10518355-10518412)
chr1 (386-450)||(30173402-30173466)
[»] chr3 (1 HSPs)
chr3 (343-456)||(32582549-32582663)


Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 38357375 - 38357835
Alignment:
Q  1 cacagaaaaaacaaataatttaaagtatgaatacaaaatacttattgtacagaaactatcacaatttcttaattttgtttctttgaaaagacatgattat 100  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||  ||    
T  38357375 cacagaaaaaatagataatttaaagtatgaatacaaaatacttattgtacagaaactatcacaatttcttagttttgtttctttgaaaagacaagaggat 38357474  T
Q  101 tttttatattttgttaaaacggtagtttcctttttcttgctaacggcaggttaactcactgtcaaacaaggggaagtaagtgttaaattaaaatatatag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||     
T  38357475 tttttatattttgttaaaacggtagtttcctttttcttgctaacggcaggttaactcaccgtcaaacaaggggaagtaagtgttaaattaaaagatataa 38357574  T
Q  201 ggggtgtgggtgacattttaaatgacctcatggaaggtcaatgtaattatccctttattttatgaacttaatagtgttttttgataagcttattcatttg 300  Q
    ||||  || |||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38357575 gggga-tgagtgacattttaaatgacctcagaggaggtcaatgtaattatccctttattttatgaacttaatagtgttttttgataagcttattcatttg 38357673  T
Q  301 gcttatagttgtagcttatcacttttacttcaatttcttccctgcaatattagttgaataaataaatattaattaaatttacctctttatgttattgcat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38357674 gcttatagttgtagcttatcacttttacttcaatttcttccctgcaatattagttgaataaataaatattaattaaatttacctctttatgttattgcat 38357773  T
Q  401 acttataagctacttcaactactaattttaacaaatattgtaaattcaatcaactaatctat 462  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||| ||||    
T  38357774 acttataagctacttcaactattaattttaacaaatattgcaaattcaatcagctaagctat 38357835  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 37 - 258
Target Start/End: Original strand, 19602021 - 19602249
Alignment:
Q  37 aatacttattgtacagaaa-ctatcacaatttcttaattttgtttctttgaaaagacatgattattttttatattttgttaaaacggtagtttccttttt 135  Q
    ||||||||||||||||||| || |||||  ||||||   ||||||||||||||||||| ||   |||||  | ||||||||||| ||||||||| |||||    
T  19602021 aatacttattgtacagaaagctgtcacaggttcttagcattgtttctttgaaaagacacgagggtttttagtgttttgttaaaatggtagtttcattttt 19602120  T
Q  136 cttgctaacggcaggttaactcactgtcaaacaagggga-------agtaagtgttaaattaaaatatatagggggtgtgggtgacattttaaatgacct 228  Q
    |||||||||||||| ||||||||| |||||  |||||||        ||||||||||| |||||||||| | ||| |||| || ||||||||||||||||    
T  19602121 cttgctaacggcagcttaactcac-gtcaaggaaggggaggtaactggtaagtgttaagttaaaatatagaagggatgtgagtaacattttaaatgacct 19602219  T
Q  229 catggaaggtcaatgtaattatccctttat 258  Q
    ||||| | ||||||||||||||| ||||||    
T  19602220 catgggatgtcaatgtaattatctctttat 19602249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 458
Target Start/End: Original strand, 39710543 - 39710645
Alignment:
Q  357 aataaataaatattaattaaatttacctc-tttatgttattgcatacttataagctacttcaactactaattttaacaaatattgtaaattcaatcaact 455  Q
    |||||||||||||||||||||  || ||  ||||||| ||| |||| | || |||||||||||| | |||||||| || | ||| |||||||||||| ||    
T  39710543 aataaataaatattaattaaacatatcttgtttatgtcatttcatattcatcagctacttcaaccattaattttatcatacattataaattcaatcagct 39710642  T
Q  456 aat 458  Q
    |||    
T  39710643 aat 39710645  T

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Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 47637263 - 47637516
Alignment:
Q  1 cacagaaaaaacaaataatttaaagtatgaatacaaaatacttattgtacagaaactatcacaatttcttaattttgtttctttgaaaagacatgattat 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |  ||||||||||||||||||||||| ||||||||||||||||||||||||  ||    
T  47637263 cacagaaaaaacaaataatttaaagtatgaatacaaaagacttagtacacagaaactatcacaatttcttagttttgtttctttgaaaagacatgaggat 47637362  T
Q  101 tttttatattttgttaaaacggtagtttcctttttcttgctaacggcaggttaactcactgtcaaacaaggggaagtaagtgttaaattaaaatatatag 200  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47637363 tttttatattttgttaaaacattagtttcctttttctcgctaacggcaggttaactcaccgtcaaacaaggggaagtaagtgttaaattaaaatatatag 47637462  T
Q  201 ggggtgtgggtgacattttaaatgacctcatggaaggtcaatgtaattatccct 254  Q
    |||||||| ||||||||||||||||||||| || ||||||||||||||||||||    
T  47637463 ggggtgtgagtgacattttaaatgacctcaggggaggtcaatgtaattatccct 47637516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 452
Target Start/End: Original strand, 15050949 - 15051033
Alignment:
Q  368 attaattaaatttacctctttatgttattgcatacttataagctacttcaactactaattttaacaaatattgtaaattcaatca 452  Q
    ||||||||| | || || ||||||| ||| |||||| |||||||| |||||| |||||||||| |||| | | ||||||||||||    
T  15050949 attaattaattatatctttttatgtcatttcatactcataagctagttcaaccactaattttaccaaacactctaaattcaatca 15051033  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 435
Target Start/End: Original strand, 3837061 - 3837132
Alignment:
Q  364 aaatattaattaaatttacc-tctttatgttattgcatacttataagctacttcaactactaattttaacaaa 435  Q
    ||||||||||||||| |||| |||||| || ||| |||| |||||||||||||||||  ||||||||| ||||    
T  3837061 aaatattaattaaatataccttcttta-gtcattacatatttataagctacttcaacggctaattttaccaaa 3837132  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 724675 - 724752
Alignment:
Q  360 aaataaatattaattaaatttacctctttat--gttattgcatacttataagctacttcaactactaattttaacaaa 435  Q
    ||||||||||||||||||| ||||| |||||  ||||||  ||| ||||||||||||||||| |||||||||| ||||    
T  724675 aaataaatattaattaaatatacctttttatatgttattttatatttataagctacttcaaccactaattttatcaaa 724752  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 437
Target Start/End: Original strand, 13692478 - 13692571
Alignment:
Q  346 aatattagttgaataaataaatattaattaaatttac--ctctttatgttattgcatacttataagctacttcaactactaattttaacaaata 437  Q
    ||||||| ||||| || ||| |||||||||||| |||   ||||||||| ||| |||| |||| | |||||||||| |||||||||| ||||||    
T  13692478 aatattacttgaaaaactaactattaattaaatatacatttctttatgtcatttcatatttattaactacttcaaccactaattttatcaaata 13692571  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 428
Target Start/End: Complemental strand, 24418223 - 24418133
Alignment:
Q  340 ccctgcaatattagttgaataaataaatattaattaaat--ttacctctttatgttattgcatacttataagctacttcaactactaattt 428  Q
    ||||||||| ||| || || |||||||||||||||||||  |||| | ||||||| ||| |||| ||||||||||||| ||| ||||||||    
T  24418223 ccctgcaatcttaatttaaaaaataaatattaattaaatgcttacttttttatgtcatttcatatttataagctacttgaacaactaattt 24418133  T

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Target: scaffold0022 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 437
Target Start/End: Complemental strand, 84914 - 84863
Alignment:
Q  386 tttatgttattgcatacttataagctacttcaactactaattttaacaaata 437  Q
    ||||||| ||| ||||  ||||||||||||||||| ||||||||||||||||    
T  84914 tttatgtcatttcatatctataagctacttcaactgctaattttaacaaata 84863  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 417
Target Start/End: Original strand, 10518355 - 10518412
Alignment:
Q  360 aaataaatattaattaaatttacctctttatgttattgcatacttataagctacttca 417  Q
    ||||||||||||||||||| ||  | ||||||||||| |||| ||||||| |||||||    
T  10518355 aaataaatattaattaaatataattttttatgttatttcatatttataagttacttca 10518412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 450
Target Start/End: Complemental strand, 30173466 - 30173402
Alignment:
Q  386 tttatgttattgcatacttataagctacttcaactactaattttaacaaatattgtaaattcaat 450  Q
    ||||||| ||| |||| |||||| ||||||||||  |||||||||||||| |||  |||||||||    
T  30173466 tttatgtcatttcatatttataaactacttcaaccgctaattttaacaaacattacaaattcaat 30173402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 456
Target Start/End: Original strand, 32582549 - 32582663
Alignment:
Q  343 tgcaatattagttgaataaataaatattaattaaatttacctcttt--atgttattgcatacttataagctacttcaactactaattttaacaaatattg 440  Q
    |||||| ||| ||||| |||||||| ||| |||| |  ||||||||  |||| ||| ||||||||||||||||||| ||  ||||||||| |||| | |     
T  32582549 tgcaatcttaattgaaaaaataaatgttacttaattgaacctctttttatgtcatttcatacttataagctacttc-acggctaattttaccaaacacta 32582647  T
Q  441 taaattcaatcaacta 456  Q
     |||||||||||||||    
T  32582648 caaattcaatcaacta 32582663  T

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