View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_low_18 (Length: 428)
Name: NF5689_low_18
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 13 - 409
Target Start/End: Complemental strand, 48126024 - 48125628
Alignment:
| Q |
13 |
aatatcaactcgttgggtatcaatgtatcatattacttttctatagtttaatctcttgcaaggttcttggtatcttgacaattaggtactgccactgata |
112 |
Q |
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| T |
48126024 |
aatatcaactcgttgggtatcaatgtatcatattacttttctatcgtttaatctcttgcaaggttcttggtatcttgacaattaggtactgccactgata |
48125925 |
T |
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| Q |
113 |
tcataattggactgcaaatttatttttctatatgtacacaatttccatctcagctttgtattttgtattacttttctttgtcatatataactctgcaagt |
212 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
48125924 |
tcataattggactgcaaatttatttttttatatgtacacaatttccatctcagctttgtattttgtattacttt--tttgtcatatataactctgtaagt |
48125827 |
T |
|
| Q |
213 |
tatttttgcaggttgaaaggcgtcaatctgaatttagaaaggtcaaaaatttattggctagaaactatgtattttgtaacaagtttcaaggttc--tgag |
310 |
Q |
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| T |
48125826 |
tatttttgcaggttgaaaggcgtcaatctgaatttagaaaggtcaaaaattctttggctagaaactatgtattttgtaacaagtttcaaggttctatgag |
48125727 |
T |
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| Q |
311 |
tacgaaacttttgttcccttaccacatttagttcatattatgtttttgtttctctttgtttaacttcaaattacatttcgcggtggaattctatagact |
409 |
Q |
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| T |
48125726 |
tacgaaacttttgttcccttaccacatttagttcatattatgtttttgtttctctttgtttaacttcaaattacatttcgcggtggaattctatagact |
48125628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 211 - 355
Target Start/End: Original strand, 48139048 - 48139194
Alignment:
| Q |
211 |
gttatttttgcaggttgaaaggcgtcaatctgaatttagaaaggtcaaaaatttattggctagaaactatgtattttgtaacaagtttcaaggttct--g |
308 |
Q |
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| T |
48139048 |
gttatttttgcagattgaaaggcgtcaatcggaatttggaaaggtcaaagatttattgactacaaactattcatctcggaataagtttgaaggctattca |
48139147 |
T |
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| Q |
309 |
agtacgaaacttttgttcccttaccacatttagttcatattatgttt |
355 |
Q |
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|||| | || |||| | ||||||||||||||||||||| |||||||| |
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| T |
48139148 |
agtatggaaattttatccccttaccacatttagttcatgttatgttt |
48139194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 356
Target Start/End: Complemental strand, 48115818 - 48115614
Alignment:
| Q |
152 |
aatttccatctcagctttgtattttgtattacttttctttgtcatatataactctgcaagttatttttgcaggttgaaaggcgtcaatctgaatttagaa |
251 |
Q |
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| T |
48115818 |
aatttccatctctgctctatatcttgtattacttttattggtcatata--attttatagcttatttttgcaggttgaacggcatcaatcagaatttggaa |
48115721 |
T |
|
| Q |
252 |
aggtcaaaaatttattggctagaaactatgtattttgtaacaagtttcaaggttct--gagtacgaaacttttgttcccttaccacatttagttcatatt |
349 |
Q |
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| |||||| |||||| |||||| |||| ||| | ||| ||||||||||| | | |||||| | || ||||||| ||||| ||||||||| || || |
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| T |
48115720 |
aagtcaaaggattattgactagaagctatttatctcctaataagtttcaaggctatacaagtacggatctgttgttcctttaccgcatttagtttatgtt |
48115621 |
T |
|
| Q |
350 |
atgtttt |
356 |
Q |
| |
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||||||| |
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| T |
48115620 |
atgtttt |
48115614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 48135938 - 48135885
Alignment:
| Q |
215 |
tttttgcaggttgaaaggcgtcaatctgaatttagaaaggtcaaaaatttattg |
268 |
Q |
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| T |
48135938 |
tttttgcaggttgaaagccgtcaattagaattcggaaaggtcaaagatttattg |
48135885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 151 - 346
Target Start/End: Original strand, 32022238 - 32022433
Alignment:
| Q |
151 |
caatttccatctcagctttgtattttgtattacttttctttgtcatatataactctgcaagttatttttgcaggttgaaaggcgtcaatctgaatttaga |
250 |
Q |
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||||||||||||| ||| | ||| ||||||||||||| |||||||||| | || | |||||||||||||||||||||||||||||||||||||| || |
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| T |
32022238 |
caatttccatctctgctctatatcttgtattacttttatttgtcatatg-atct-tataagttatttttgcaggttgaaaggcgtcaatctgaattcgga |
32022335 |
T |
|
| Q |
251 |
aaggtcaaaaatttattggctagaaactatgtattttgtaacaagtttcaagg--ttctgagtacgaaacttttgttcccttaccacatttagttcat |
346 |
Q |
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||||||||| | |||||| |||||||||||||| | ||||||||| | || || |||| ||||||||||||||||| || ||||||||||| |
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| T |
32022336 |
aaggtcaaagaattattgagtagaaactatgtatctcacaacaagtttgagggctgtccaagtatgaaacttttgttcccttttcatatttagttcat |
32022433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 106 - 247
Target Start/End: Original strand, 32010237 - 32010375
Alignment:
| Q |
106 |
actgatatcataattggactgcaaatttatttttctatatgtacacaatttccatctcagctttgtattttgtattacttttctttgtcatatataactc |
205 |
Q |
| |
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|||| |||||| |||| ||||||||||||||||| ||||||| |||||| ||||| || ||||| ||||||| ||||| |||||||||| | || |
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| T |
32010237 |
actggtatcatgattgaactgcaaatttattttt-tatatgtttctaatttctatctctgcactgtatattgtattccttttatttgtcatatc-atct- |
32010333 |
T |
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| Q |
206 |
tgcaagttatttttgcaggttgaaaggcgtcaatctgaattt |
247 |
Q |
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| T |
32010334 |
tataagttatttttgcaggttgaaaggcgtcaatctgaattt |
32010375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 25251722 - 25251791
Alignment:
| Q |
211 |
gttatttttgcaggttgaaaggcgtcaatctgaatttagaaaggtcaaaaatttattggctagaaactat |
280 |
Q |
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| T |
25251722 |
gttatttttgcagattgaaaggcgtcaatccgaatttggaaaggtcaaagatttattgactacaaactat |
25251791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 25247916 - 25247863
Alignment:
| Q |
215 |
tttttgcaggttgaaaggcgtcaatctgaatttagaaaggtcaaaaatttattg |
268 |
Q |
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||||||||||||||||| ||||||| ||||| ||||||||||| |||||||| |
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|
| T |
25247916 |
tttttgcaggttgaaagccgtcaattagaattcggaaaggtcaaagatttattg |
25247863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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