View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_low_19 (Length: 420)
Name: NF5689_low_19
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 260 - 401
Target Start/End: Complemental strand, 3562496 - 3562355
Alignment:
| Q |
260 |
caataaaaatacaatttttagaacctcctaaataaatgatttagagaatttggttatacgatttatgcggctttgtaacattcacaatgatatgtataaa |
359 |
Q |
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| T |
3562496 |
caataaaaatacaatttttagaacctcctaaataaatgatttagagaatttggttatacgatttatgtggctttgtaacattcacaatgatatgtataaa |
3562397 |
T |
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| Q |
360 |
atacagggttttttgtgtaatttaatttgcaaccctgatttt |
401 |
Q |
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| T |
3562396 |
atacagggttttttgtgtaatttaatttgcaaccctgatttt |
3562355 |
T |
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Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 3562752 - 3562571
Alignment:
| Q |
1 |
gggaatggagatgtgatatctgagattccattaggggctaaaaataagtacattaggatgacatctnnnnnnnnnnnnnnnnnnnnnnnnnggtttgcaa |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
3562752 |
gggaatggagatgtgat---tgagattccattaggggctaaaaataagtacattaggatgacatctgaagaggaagaagaagaagaagaagggttcgcaa |
3562656 |
T |
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| Q |
101 |
ccaggaagcatgattccaagaaatatatctttgcatgtgccgtttttgcttctctcaattctgttcttctcggctatggtaggta |
185 |
Q |
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| T |
3562655 |
ccaggaagcatgattccaagaaatatatctttgcatgtgccgtttttgcttctctcaattctgttcttctcggctatggtaggta |
3562571 |
T |
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