View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_low_20 (Length: 419)
Name: NF5689_low_20
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_low_20 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 13 - 419
Target Start/End: Original strand, 45312394 - 45312800
Alignment:
| Q |
13 |
aaaatatctaaatacatgaatggtcctatagattaatataaacatagcctcgtaatagaatggtcccatagactgtacatttggttatgtttgatttcat |
112 |
Q |
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| T |
45312394 |
aaaatatctaaatacatgaatggtcctatagattaatataaacatagcctcgtaatagaatggtcccatagactgtacatttggttatgtttgatttcat |
45312493 |
T |
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| Q |
113 |
gtctaaacttacttttatctcatgtcaaatagaattttagtgaaaatgtaggaatttggtatgtaacttttgtgttgcattgtaaatccatagtaagtta |
212 |
Q |
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| T |
45312494 |
gtctaaacttacttttatctcatgtcaaatagaattttagtgaaaatgtaggaatttggtatgtaacttttgtgttacattgtaaatccatagtaagtta |
45312593 |
T |
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| Q |
213 |
ttcatcaaacttcttaaaggagtaacgacatccaaacacttgaacttatttgtaaccaaatcaagcttaaaatcaaaattaactttatcgaacatttact |
312 |
Q |
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| T |
45312594 |
ttcatcaaacttcttaaaggagtaacgacatccaaacacttgaacttatttgtaaccaaatcaagcttaaactcaaaattacctttatcgaacatttact |
45312693 |
T |
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| Q |
313 |
cgcacatatttagatcagttaatttcatctccccttaggctgtatgtattgccctagatccaacattttaggatttcttgttggtgtgtgtgacaatgtg |
412 |
Q |
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| T |
45312694 |
cacacatatttagatcagttaatttcatctccccttaggctgtatgtattgccctagatccaacattttaggatttcttgttggtgtgtgtgacaatgtg |
45312793 |
T |
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| Q |
413 |
atccatc |
419 |
Q |
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| T |
45312794 |
acccatc |
45312800 |
T |
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Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 173 - 400
Target Start/End: Complemental strand, 54633144 - 54632918
Alignment:
| Q |
173 |
atgtaacttttgtgttgcattgtaaatccatagtaagttattcatcaaacttcttaaaggagtaacgacatccaaacacttgaacttatttgtaaccaaa |
272 |
Q |
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| T |
54633144 |
atgtaccttttgagttacattgtaaatccatcttaagttaatcatcaaacttcttaaaggagtaac-atatccaaacattcaaacttatttgtaaccaaa |
54633046 |
T |
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| Q |
273 |
tcaagcttaaaat-caaaattaactttatcgaacatttactcgcacatatttagatcagttaatttcatctccccttaggctgtatgtattgccctagat |
371 |
Q |
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| T |
54633045 |
tcaagcttaaacttcgaacttacctttatcaaatgtttactcgaaca-atttacatcagttaatttcaactccccttaggctgtatgtattacactagat |
54632947 |
T |
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| Q |
372 |
ccaacattttaggatttcttgttggtgtg |
400 |
Q |
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| T |
54632946 |
ccagcattttaggatttgttgttggtgtg |
54632918 |
T |
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