View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_low_21 (Length: 405)
Name: NF5689_low_21
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 6 - 390
Target Start/End: Original strand, 33438216 - 33438596
Alignment:
| Q |
6 |
cataggcatggatatgaaaagcaaaaattaaatgtacaacttgttttcgaaagcaaatgtaaaactcatcaatcaacattaaatgtgctattagcaacaa |
105 |
Q |
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| T |
33438216 |
cataggcatggatatgaaaagcaaaaattaaatgtacaacttgttttcgaaagcaaatgtaaaactcatcaatcaacattaaatgtgctattattaacaa |
33438315 |
T |
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| Q |
106 |
aa-aataaacattaaatgggtaacctgtaaatgagttaattttacagcttaaatttcgttttcaaatctcccaatatattgttcaagttgttttgacttc |
204 |
Q |
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| T |
33438316 |
aaaaataaacattaaatgggtaacctgtaaatgagttaattttacagcttaaatttcgttttcaaatcccccaatatattgatcaagttgttttgacttc |
33438415 |
T |
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| Q |
205 |
caagcattgaatcaaacacgagttggccatttagggcaaacgttaatttaatttgtgtggataccacatactactatatgaaagcaaccaaaccttctct |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33438416 |
caagcattgaatcaaacacgagttggccatttagggcaaacg-----ttaatttgtgtggataccacatactactatatgaaagcaaccaaaccttctct |
33438510 |
T |
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| Q |
305 |
agtcctaatgatatattggccaaacgtttgtgtggatactacataataatagtatgatatttgctgctacacaagatccagttttt |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33438511 |
agtcctaatgatatattggccaaacgtttgtgtggatactacataataatagtatgatatttgctgctacacaagatccagttttt |
33438596 |
T |
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