View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_low_22 (Length: 399)
Name: NF5689_low_22
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 34 - 361
Target Start/End: Original strand, 23406948 - 23407278
Alignment:
| Q |
34 |
aagaaataataaagttagataaatttagattattttatccttaattcaagtaaaatctatttaatgcatatttttatctctttaagagtacgtacaaagg |
133 |
Q |
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| T |
23406948 |
aagaaataataaagttagataaatttagataattttatccttaattcaagtaaaatctatttaatgcatgtttttatttcttttagagtacgtacaaagg |
23407047 |
T |
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| Q |
134 |
gaaaaacaccat-taattgtatttaagtttcttaaagaaaaaatgttttttgctgattgcaaccaagagatttcagatt--caaattaaagaggatttga |
230 |
Q |
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| T |
23407048 |
gaaaaacaccatataattgtattaaagtttcttaaagataaaatgttttgtgctgattgcaaacaagagatctcagaataacaaattaaagaggatttga |
23407147 |
T |
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| Q |
231 |
ttggtaaataaataaatgggattgcattccttttcggtgttttaaagctagcgatttgtttttatcattatggtaacagaatgtcaatggtatcctagtt |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23407148 |
ttggtaaataaataaatgggattgcattccttttcggtgttttaaagctaccgatttgtttttatcattatcgtaacagaatgtcaatggtatcctagtt |
23407247 |
T |
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| Q |
331 |
tttatgttaattatctcacaattttagtgat |
361 |
Q |
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|||||||||||||||||||| |||||||||| |
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| T |
23407248 |
tttatgttaattatctcacagttttagtgat |
23407278 |
T |
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