View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_low_26 (Length: 378)
Name: NF5689_low_26
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 49596245 - 49596613
Alignment:
| Q |
1 |
tcatacaactgaaaagatttctcatatagcttgcatcattaaaaacaactaagaaaataaaatcttcaacttgtttcattagcagactgctggtaaggaa |
100 |
Q |
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| T |
49596245 |
tcatacaactgaaaagatttctcatatagcttgcatcattaaaaacaactaagaaaataaaatcttcaacttgtttcattagcagactgctggtaaggaa |
49596344 |
T |
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| Q |
101 |
gacgatgttctggaaccccctcctcggcacgtttgtcttcaaaccacttgataacagttctccgcggaatgtttgaaacatgcacaatattactaatcat |
200 |
Q |
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| T |
49596345 |
gacgatgttctggaaccccctcctcggcacgtttgtcttcaaaccacttgataacagttctccgcggaatgtttgaaacatgcacaatattactaatcat |
49596444 |
T |
|
| Q |
201 |
tgcattctgcattgtaattcaaggcagacaggtaaggatgttgaagttaacaagttgtgaaataaggagaattgcagaattatcgtataccaagacacat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
49596445 |
tgcattctgcattgtaattcaaggcagacaggtaaggatgttgaagttaacaagttgtgaaataaggagaattgcagaattatcatataccaagacacat |
49596544 |
T |
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| Q |
301 |
gcttgtcacttttaatgctataatatgcagcgatggatgcatataatgtttattaactttcagtataat |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49596545 |
gcttgtcacttttaatgctataatatgcagcgatggatgcatataatgtttattaactttcaatataat |
49596613 |
T |
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