View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5689_low_29 (Length: 362)

Name: NF5689_low_29
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5689_low_29
NF5689_low_29
[»] chr7 (5 HSPs)
chr7 (1-87)||(31069311-31069397)
chr7 (150-219)||(31069460-31069529)
chr7 (286-351)||(31069596-31069661)
chr7 (286-350)||(37614334-37614398)
chr7 (290-350)||(42440446-42440506)


Alignment Details
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 31069311 - 31069397
Alignment:
Q  1 aattgcttcagttcttccaaaaatggtcaaggaatatcacaagattcatctcaacacatttcgttaatataaataagaagataatag 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31069311 aattgcttcagttcttccaaaaatggtcaaggaatatcacaagattcatctcaacacatttcgttaatataaataagaagataatag 31069397  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 31069460 - 31069529
Alignment:
Q  150 atgtcttcttccttcagcaaggtgatgttaagcttcaaaaccattccccctattcttcacttgtgtctct 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31069460 atgtcttcttccttcagcaaggtgatgttaagcttcaaaaccattccccctattcttcacttgtgtctct 31069529  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 286 - 351
Target Start/End: Original strand, 31069596 - 31069661
Alignment:
Q  286 atgaagttgttcttctgctacttgaaagattttgtgggaagagaaatgacggtagaactcaagaat 351  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31069596 atgaagttgttcttctgctacttgaaagattttgcgggaagagaaatgacggtagaactcaagaat 31069661  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 37614334 - 37614398
Alignment:
Q  286 atgaagttgttcttctgctacttgaaagattttgtgggaagagaaatgacggtagaactcaagaa 350  Q
    |||||| |||||||||  ||||| |||||||| |||||||||||| ||||||| |||||||||||    
T  37614334 atgaagctgttcttctcgtacttcaaagatttggtgggaagagaagtgacggttgaactcaagaa 37614398  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 290 - 350
Target Start/End: Original strand, 42440446 - 42440506
Alignment:
Q  290 agttgttcttctgctacttgaaagattttgtgggaagagaaatgacggtagaactcaagaa 350  Q
    ||||||||||||  ||||| |||||||| |||||||||||| | |||||||||||||||||    
T  42440446 agttgttcttctcatacttcaaagatttggtgggaagagaagttacggtagaactcaagaa 42440506  T

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