View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5689_low_3 (Length: 574)

Name: NF5689_low_3
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5689_low_3
NF5689_low_3
[»] chr3 (8 HSPs)
chr3 (23-567)||(17682199-17682751)
chr3 (128-495)||(19766578-19766930)
chr3 (383-545)||(53559167-53559328)
chr3 (19-129)||(19766437-19766547)
chr3 (25-70)||(19881742-19881787)
chr3 (25-59)||(37982797-37982831)
chr3 (25-56)||(53972931-53972962)
chr3 (25-70)||(31685508-31685553)
[»] chr4 (6 HSPs)
chr4 (204-370)||(22292032-22292201)
chr4 (128-201)||(22292289-22292362)
chr4 (218-273)||(29862802-29862857)
chr4 (25-69)||(29862993-29863037)
chr4 (173-205)||(7135469-7135501)
chr4 (86-122)||(29862955-29862991)
[»] chr6 (7 HSPs)
chr6 (204-370)||(15434058-15434227)
chr6 (204-273)||(10093072-10093141)
chr6 (128-201)||(15434298-15434371)
chr6 (204-273)||(33044884-33044953)
chr6 (25-59)||(10092917-10092951)
chr6 (84-129)||(10092961-10093006)
chr6 (25-59)||(33045088-33045122)
[»] scaffold0045 (2 HSPs)
scaffold0045 (204-273)||(11072-11141)
scaffold0045 (25-70)||(11265-11310)
[»] chr8 (6 HSPs)
chr8 (204-273)||(5658370-5658439)
chr8 (204-273)||(14677460-14677529)
chr8 (204-273)||(31100310-31100379)
chr8 (25-70)||(14677653-14677698)
chr8 (25-70)||(31100503-31100548)
chr8 (25-70)||(5658201-5658246)
[»] scaffold0035 (1 HSPs)
scaffold0035 (205-273)||(35676-35744)
[»] chr2 (4 HSPs)
chr2 (25-68)||(18354946-18354989)
chr2 (25-70)||(23348611-23348656)
chr2 (19-104)||(32277437-32277526)
chr2 (25-59)||(12742133-12742167)
[»] chr7 (3 HSPs)
chr7 (25-70)||(1262534-1262579)
chr7 (25-70)||(43071013-43071058)
chr7 (25-70)||(48849413-48849458)
[»] chr5 (3 HSPs)
chr5 (25-70)||(7473120-7473165)
chr5 (25-70)||(30442177-30442222)
chr5 (25-59)||(9044247-9044281)
[»] scaffold0596 (1 HSPs)
scaffold0596 (25-70)||(1099-1144)


Alignment Details
Target: chr3 (Bit Score: 487; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 23 - 567
Target Start/End: Original strand, 17682199 - 17682751
Alignment:
Q  23 tccccttcaccaatgctctcgattccgacatcacctttgctgttgtcgactttcccaccaccgtctgcggcatcgtatcagccagacaagcaaaaagaac 122  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17682199 tccccttcaccaatgctctcgattccgacatcacctttgccgttgtcgactttcccaccaccgtctgcggcatcgtatcagccagacaagcaaaaagaac 17682298  T
Q  123 cgcacaaagagaaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaatgctctcaaggtaatcgcttt 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17682299 cgcacaaagagaaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaatgctctcaaggtaatcgtttt 17682398  T
Q  223 tccctttctatgaattgaactgtgttttgagtttaattactctccacctctcaat----tgtttcttcaattccatt----attggtaataaatttgcaa 314  Q
    ||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||    ||||||||||||||||||    |||||||||||||||||||    
T  17682399 tccctttctatgaattgaattgtgttttgagattaatcactctccacctctcaatatattgtttcttcaattccattcattattggtaataaatttgcaa 17682498  T
Q  315 ttaggttcacaacacagtcagatttgggtctctgacgagaatagggtcatagttgacgattcagtttcatctcaatttcatccctcactttcatcttctc 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  17682499 ttaggttcacaacacagtcagatttgggtctctgacgagaatagggtcatagttgacgattcagtttcatctcagtttcacccctcactttcatcttctc 17682598  T
Q  415 tgttttggcgatgattcaatttcgaccgttgaggtaagaagtatgggatgagatggaacaagactgtagcataaacatggaatggaacattggtgtatca 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17682599 tgttttggcgatgattcaatttcgaccgttgaggtaagaagtatgggatgagatggaacaagactgtagcagaaacatggaatggaacattggtgtatca 17682698  T
Q  515 gttgtaggtgctccctctctcactatgtttcctctctcactgcagttcatctc 567  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17682699 gttgtaggtgctccctctctcactatgtttcctctctcactgcagttcatctc 17682751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 128 - 495
Target Start/End: Original strand, 19766578 - 19766930
Alignment:
Q  128 aaagagaaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaatgctctcaaggtaatcgcttttccct 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19766578 aaagagaaagaagccatggaaatttgcaatctcgattggaagctcctgtcgttgctctctccattcatcaacaatgctctcaaggtaatcgcttttccct 19766677  T
Q  228 ttctatgaattgaactgtgttttgagtttaat--tactctccacctctcaattgtttcttcaattccattattggtaataaatttgcaattaggttcaca 325  Q
    ||||||||| |||| |||||||||||||||||   ||||||||||||||| |||||||||||||||||||                  ||||||||||||    
T  19766678 ttctatgaaatgaattgtgttttgagtttaatcacactctccacctctcagttgtttcttcaattccatt-----------------cattaggttcaca 19766760  T
Q  326 acacagtcagatttgggtctctgacgagaatagggtcatagttgacgattcagtttcatctcaatttcatccctcactttcatcttctctgttttggcga 425  Q
    ||| | |||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| ||||| |||||||||||||||| ||||||||||| |    
T  19766761 acataatcagatttaggtctctgacgagaataaggtcatagttggcgattcagtttcatctcagtttcacccctcactttcatcttttctgttttggcaa 19766860  T
Q  426 tgattcaatttcgaccgttgaggtaagaagtatgggatgagatggaacaagactgtagcataaacatgga 495  Q
     ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||    
T  19766861 cgattcaatttcgaccgttgaggtaagaagtatgggatgaaatggaacaagattgtagcagaaacatgga 19766930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 383 - 545
Target Start/End: Complemental strand, 53559328 - 53559167
Alignment:
Q  383 atctcaatttcatccctcactttcatcttctctgttttggcgatgattcaatttcgaccgttgaggtaagaagtatgggatgagatggaacaagactgta 482  Q
    |||||| ||||| ||||||||||||||||||| |||||||||| | ||||||||| ||  |||||||||||||||||| |||| ||||||||||| ||||    
T  53559328 atctcagtttcacccctcactttcatcttctcagttttggcgacggttcaatttcaacttttgaggtaagaagtatggaatgaaatggaacaagattgta 53559229  T
Q  483 gcataaacatggaatggaacattggtgtatcagttgtaggtgctccctctctcactatgtttc 545  Q
    ||| || |||||||||||||| || ||||| |||| ||||| |||||||||||| ||| ||||    
T  53559228 gcagaagcatggaatggaaca-tgatgtattagttttaggtactccctctctcaatatttttc 53559167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 19766437 - 19766547
Alignment:
Q  19 ccactccccttcaccaatgctctcgattccgacatcacctttgctgttgtcgactttcccaccaccgtctgcggcatcgtatcagccagacaagcaaaaa 118  Q
    ||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| ||| ||||||| |||  |||||||||||| |||||||||||||    
T  19766437 ccactccccttcaccaatgctctagattccgacatcaccttcgccgttgtcgacttccccgccaccgtatgcatcatcgtatcagctagacaagcaaaaa 19766536  T
Q  119 gaaccgcacaa 129  Q
    |||||||||||    
T  19766537 gaaccgcacaa 19766547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 19881787 - 19881742
Alignment:
Q  25 cccttcaccaatgctctcgattccgacatcacctttgctgttgtcg 70  Q
    ||||||||||||||||||||||||||||||||||| || |||||||    
T  19881787 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 19881742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 37982797 - 37982831
Alignment:
Q  25 cccttcaccaatgctctcgattccgacatcacctt 59  Q
    |||||||||||||||||||||||||||||||||||    
T  37982797 cccttcaccaatgctctcgattccgacatcacctt 37982831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 53972962 - 53972931
Alignment:
Q  25 cccttcaccaatgctctcgattccgacatcac 56  Q
    ||||||||||||||||||||||||||||||||    
T  53972962 cccttcaccaatgctctcgattccgacatcac 53972931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 31685508 - 31685553
Alignment:
Q  25 cccttcaccaatgctctcgattccgacatcacctttgctgttgtcg 70  Q
    ||||||||||||| | ||||||||||||||||||| || |||||||    
T  31685508 cccttcaccaatgatatcgattccgacatcaccttcgccgttgtcg 31685553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 204 - 370
Target Start/End: Complemental strand, 22292201 - 22292032
Alignment:
Q  204 ctctcaaggtaatcgcttttccctttctatgaattgaactgtgttttgagtttaattactctccacctctcaattgtttcttcaattccatt-att--gg 300  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||| ||| |||||||||||||||||||| |||||||||||||| |||| |||        
T  22292201 ctctcaaggtaatcgcttttccctttctatgtattgaattgtgtttttagtctaattactctccacctctcagttgtttcttcaattgcattcattaatt 22292102  T
Q  301 taataaatttgcaattaggttcacaacacagtcagatttgggtctctgacgagaatagggtcatagttga 370  Q
    |  ||||||||||||||| ||||||||||| ||| ||||||| |||||| ||||| ||||| ||||||||    
T  22292101 ttgtaaatttgcaattagattcacaacacaatcacatttggggctctgatgagaacagggtaatagttga 22292032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 22292362 - 22292289
Alignment:
Q  128 aaagagaaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaa 201  Q
    ||||||||| ||||||||||||||||||||||| | |||| |||||| |||||||||||||| |||||||||||    
T  22292362 aaagagaaataagccatggaaatttgcaatctcaagtggaggctcccatcgttgctctctccgttcatcaacaa 22292289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 218 - 273
Target Start/End: Complemental strand, 29862857 - 29862802
Alignment:
Q  218 gcttttccctttctatgaattgaactgtgttttgagtttaattactctccacctct 273  Q
    ||||||| |||||||||||||||| |||||| ||||| |||| |||||||||||||    
T  29862857 gcttttctctttctatgaattgaattgtgttatgagtctaatcactctccacctct 29862802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 29863037 - 29862993
Alignment:
Q  25 cccttcaccaatgctctcgattccgacatcacctttgctgttgtc 69  Q
    ||||||||| |||||||||||||||||||||| ||||| ||||||    
T  29863037 cccttcaccgatgctctcgattccgacatcacttttgccgttgtc 29862993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 7135469 - 7135501
Alignment:
Q  173 ccgtcgttgctctctcccttcatcaacaatgct 205  Q
    |||||||| ||||||||||||||||||||||||    
T  7135469 ccgtcgtttctctctcccttcatcaacaatgct 7135501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 29862991 - 29862955
Alignment:
Q  86 tctgcggcatcgtatcagccagacaagcaaaaagaac 122  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  29862991 tctgcggcatcgtatcagccaggcaaacaaaaagaac 29862955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 7e-32; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 204 - 370
Target Start/End: Complemental strand, 15434227 - 15434058
Alignment:
Q  204 ctctcaaggtaatcgcttttccctttctatgaattgaactgtgttttgagtttaattactctccacctctcaattgtttcttcaattccatt-att--gg 300  Q
    ||||||| ||||||||||||||||||||| | |||||| |||||||| ||| |||| || |||||||||||| ||||||||||||||||||| |||        
T  15434227 ctctcaacgtaatcgcttttccctttctacgtattgaattgtgtttttagtctaatcaccctccacctctcagttgtttcttcaattccattcattaatt 15434128  T
Q  301 taataaatttgcaattaggttcacaacacagtcagatttgggtctctgacgagaatagggtcatagttga 370  Q
    |  ||||||||||||||| ||||||||| | |||||||||||||||||| ||||| ||| | ||||||||    
T  15434127 ttgtaaatttgcaattagattcacaacagaatcagatttgggtctctgatgagaacaggctaatagttga 15434058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 10093072 - 10093141
Alignment:
Q  204 ctctcaaggtaatcgcttttccctttctatgaattgaactgtgttttgagtttaattactctccacctct 273  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||| |||| |||||||||||||    
T  10093072 ctctcaaggtaatagcttttccctttctatgaattgaattgtgttttgagtctaatcactctccacctct 10093141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 15434371 - 15434298
Alignment:
Q  128 aaagagaaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaa 201  Q
    ||||||||| ||||||||||||||||||||||| | |||  |||||| ||||||||||||||||||||||||||    
T  15434371 aaagagaaataagccatggaaatttgcaatctcaagtgggggctcccatcgttgctctctcccttcatcaacaa 15434298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 33044953 - 33044884
Alignment:
Q  204 ctctcaaggtaatcgcttttccctttctatgaattgaactgtgttttgagtttaattactctccacctct 273  Q
    ||||||||||||| |||||||| ||||||||||||||| |||||||||||| |||| |||||||||||||    
T  33044953 ctctcaaggtaatagcttttccttttctatgaattgaattgtgttttgagtctaatcactctccacctct 33044884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 10092917 - 10092951
Alignment:
Q  25 cccttcaccaatgctctcgattccgacatcacctt 59  Q
    |||||||||||||||||||||||||||||||||||    
T  10092917 cccttcaccaatgctctcgattccgacatcacctt 10092951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 10092961 - 10093006
Alignment:
Q  84 cgtctgcggcatcgtatcagccagacaagcaaaaagaaccgcacaa 129  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||    
T  10092961 cgtctgcggcatcgtatcagccaggcaaacaaaaagaacagcacaa 10093006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 33045122 - 33045088
Alignment:
Q  25 cccttcaccaatgctctcgattccgacatcacctt 59  Q
    |||||||||||||||||||||||| ||||||||||    
T  33045122 cccttcaccaatgctctcgattccaacatcacctt 33045088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 11141 - 11072
Alignment:
Q  204 ctctcaaggtaatcgcttttccctttctatgaattgaactgtgttttgagtttaattactctccacctct 273  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||| |||| |||||||||||||    
T  11141 ctctcaaggtaatagcttttccctttctatgaattgaattgtgttttgagtctaatcactctccacctct 11072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 11310 - 11265
Alignment:
Q  25 cccttcaccaatgctctcgattccgacatcacctttgctgttgtcg 70  Q
    |||||||||||||||||||| |||||||||||||| || |||||||    
T  11310 cccttcaccaatgctctcgaatccgacatcaccttcgccgttgtcg 11265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 5658370 - 5658439
Alignment:
Q  204 ctctcaaggtaatcgcttttccctttctatgaattgaactgtgttttgagtttaattactctccacctct 273  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||| |||| |||||||||||||    
T  5658370 ctctcaaggtaatagcttttccctttctatgaattgaattgtgttttgagtctaatcactctccacctct 5658439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 14677529 - 14677460
Alignment:
Q  204 ctctcaaggtaatcgcttttccctttctatgaattgaactgtgttttgagtttaattactctccacctct 273  Q
    ||||||||||||| |||||||||||||||||||||||| |||||| |||||  ||| |||||||||||||    
T  14677529 ctctcaaggtaatagcttttccctttctatgaattgaattgtgttctgagtccaatcactctccacctct 14677460  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 31100379 - 31100310
Alignment:
Q  204 ctctcaaggtaatcgcttttccctttctatgaattgaactgtgttttgagtttaattactctccacctct 273  Q
    ||||||||||||| |||||| | ||||||||||||||| |||||||||||| |||| |||||||||||||    
T  31100379 ctctcaaggtaatagctttttcttttctatgaattgaattgtgttttgagtctaatcactctccacctct 31100310  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 14677698 - 14677653
Alignment:
Q  25 cccttcaccaatgctctcgattccgacatcacctttgctgttgtcg 70  Q
    ||||||||||||||||||||||||||||||||||| || |||||||    
T  14677698 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 14677653  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 31100548 - 31100503
Alignment:
Q  25 cccttcaccaatgctctcgattccgacatcacctttgctgttgtcg 70  Q
    |||||||||||||||||||||||| |||||||||| || |||||||    
T  31100548 cccttcaccaatgctctcgattccaacatcaccttcgccgttgtcg 31100503  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 5658201 - 5658246
Alignment:
Q  25 cccttcaccaatgctctcgattccgacatcacctttgctgttgtcg 70  Q
    ||||||||||||||||| |||||| |||||||||| || |||||||    
T  5658201 cccttcaccaatgctcttgattccaacatcaccttcgccgttgtcg 5658246  T

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Target: scaffold0035 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 205 - 273
Target Start/End: Original strand, 35676 - 35744
Alignment:
Q  205 tctcaaggtaatcgcttttccctttctatgaattgaactgtgttttgagtttaattactctccacctct 273  Q
    |||||||||||| |||||||||||||||||||||||| |||||| ||||| |||| |||||||||||||    
T  35676 tctcaaggtaatagcttttccctttctatgaattgaattgtgttctgagtctaatcactctccacctct 35744  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 18354989 - 18354946
Alignment:
Q  25 cccttcaccaatgctctcgattccgacatcacctttgctgttgt 68  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  18354989 cccttcaccaatgctctcgattccgacatcaccttcgctgttgt 18354946  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 23348656 - 23348611
Alignment:
Q  25 cccttcaccaatgctctcgattccgacatcacctttgctgttgtcg 70  Q
    ||||||||||||||||||||||||||||||||||| || |||||||    
T  23348656 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 23348611  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 32277437 - 32277526
Alignment:
Q  19 ccactccccttcaccaatgctctcgattccgacatcacctttgctgttgtcgactt----tcccaccaccgtctgcggcatcgtatcagc 104  Q
    ||||||||||||||| || |||||||||||||||||| | | || |||||||||||     ||| ||||| |||||||||||||||||||    
T  32277437 ccactccccttcaccgattctctcgattccgacatcatcctcgccgttgtcgacttccccgcccgccaccatctgcggcatcgtatcagc 32277526  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 12742133 - 12742167
Alignment:
Q  25 cccttcaccaatgctctcgattccgacatcacctt 59  Q
    |||||||||||||||||||||||||||||||||||    
T  12742133 cccttcaccaatgctctcgattccgacatcacctt 12742167  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 1262534 - 1262579
Alignment:
Q  25 cccttcaccaatgctctcgattccgacatcacctttgctgttgtcg 70  Q
    ||||||||||||||||||||||||||||||||||| || |||||||    
T  1262534 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 1262579  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 43071058 - 43071013
Alignment:
Q  25 cccttcaccaatgctctcgattccgacatcacctttgctgttgtcg 70  Q
    ||||||||||||||||||||||||||||||||||| || |||||||    
T  43071058 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 43071013  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 48849458 - 48849413
Alignment:
Q  25 cccttcaccaatgctctcgattccgacatcacctttgctgttgtcg 70  Q
    ||||||||||||||||||||||||||||||||||| || |||||||    
T  48849458 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 48849413  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 7473165 - 7473120
Alignment:
Q  25 cccttcaccaatgctctcgattccgacatcacctttgctgttgtcg 70  Q
    ||||||||||||||||||||||||||||||||||| || |||||||    
T  7473165 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 7473120  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 30442222 - 30442177
Alignment:
Q  25 cccttcaccaatgctctcgattccgacatcacctttgctgttgtcg 70  Q
    ||||||||||||||||||||||||||||||||||| || |||||||    
T  30442222 cccttcaccaatgctctcgattccgacatcaccttggccgttgtcg 30442177  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 9044247 - 9044281
Alignment:
Q  25 cccttcaccaatgctctcgattccgacatcacctt 59  Q
    |||||||||||||||||||||| ||||||||||||    
T  9044247 cccttcaccaatgctctcgatttcgacatcacctt 9044281  T

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Target: scaffold0596 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 1099 - 1144
Alignment:
Q  25 cccttcaccaatgctctcgattccgacatcacctttgctgttgtcg 70  Q
    |||||||||||||||||||||||||||||||| || || |||||||    
T  1099 cccttcaccaatgctctcgattccgacatcactttcgccgttgtcg 1144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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