View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_low_30 (Length: 361)
Name: NF5689_low_30
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 147 - 330
Target Start/End: Original strand, 37639294 - 37639472
Alignment:
| Q |
147 |
attgtgaacatgtccttcatgtgtcacattgtaatatatttaatttaatgtgaaatgatttttattccattgtttgttgtgcaaaatataattttattct |
246 |
Q |
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| T |
37639294 |
attgtgaacatgtccttcatgtgtcacattgtaatatatttaatttaatgtgaaattatttttattccattgtttgttgtgcaaaatccaattttattct |
37639393 |
T |
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| Q |
247 |
tgtggttccctttattttaattggatggatcgtggatcatacaatatattatacatagtgtaaaaatccagtgagattcgttgg |
330 |
Q |
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| T |
37639394 |
tgtggttccctttattttaattggatggatcgtggatcatacaa-----tatacatagtgtaaaaatccagtgagattcgttgg |
37639472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 37639192 - 37639293
Alignment:
| Q |
12 |
atgaagaattctattactataataactttggtgcataaagaaattttgaaattggttgcattgttagatttttatgcattcaaaattataattagaattc |
111 |
Q |
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| T |
37639192 |
atgaagaattctattactataa---ctttggtgcataaagaaattttgaaattgattgcattgttatatttttatgcattcaaaattataattagaattc |
37639288 |
T |
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| Q |
112 |
tctat |
116 |
Q |
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| T |
37639289 |
tctat |
37639293 |
T |
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