View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_low_33 (Length: 335)
Name: NF5689_low_33
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 319
Target Start/End: Original strand, 55372627 - 55372926
Alignment:
| Q |
20 |
tattgaaaatgccaaatgatagaaagctaattttctgcaaagcagtttcattagctgtgaatttgtgatatgtgatacattaatatatcttcactatatt |
119 |
Q |
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| T |
55372627 |
tattgaaaatgccaaatgatacaaagctaattttctacaaaacagtttcattagatgtgaacttgtgatatgtgatacattaatatatcttcactatatt |
55372726 |
T |
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| Q |
120 |
aacatgacctcccaacaaaacaactcaatggacctgcattgagagttatagcaggtaccatataacctggaacagccacaaaagattgagcaggtgtata |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55372727 |
aacatgacctcccaacaaaacaactcaatggacctgcattgagagttatagcaggtaccatataacctggaacagccacaaaagattgagcaggtgtata |
55372826 |
T |
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| Q |
220 |
atttggtgcacaagttccatatccagatggtataaaataagcaccatttgaaaaataatccttagaagatctccatttccaactcttccaatttcccttt |
319 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
55372827 |
atttggtgcacaacttccatatccagatggtataaaataagcaccatttgaaaaataatcctttgaagatctccatttccaactcttccaatttcccttt |
55372926 |
T |
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