View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_low_36 (Length: 320)
Name: NF5689_low_36
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 34816527 - 34816242
Alignment:
| Q |
18 |
ttttccgcatcatacccttgaaccaatcctctcccccgacccccattacccacaccacacaagtccttccaccacaatgaagctagactcaatctgtcaa |
117 |
Q |
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| T |
34816527 |
ttttccgcatcatacccttgaaccaatcctctcccccaacccccattacccacaccacacaagtccttccaccacaatgaagctagactcaatctgtcaa |
34816428 |
T |
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| Q |
118 |
aattagataaatccgagttagccacaatactaactttgtacttggcatataaggcaccttttgcaatgagaatcacccttgcagtagtactctcattaat |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34816427 |
aattagataaatccgagttagccacaataccaactttgtacttggc--atacggcaccttttgcaatgagaatcacccttgcagcagtactctcattaat |
34816330 |
T |
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| Q |
218 |
gatattgggatagaacccaaaatagaattgatgtgaacgactctaccactgagactaacatatatatcctcaacgatcgcaatttgat |
305 |
Q |
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||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34816329 |
gatgttgggatagaacccaaaatagaattgatgtgaacaactctaccactgagactaacatatgtatcctcaacgatcgcaatttgat |
34816242 |
T |
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