View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_low_37 (Length: 320)
Name: NF5689_low_37
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 49015286 - 49014992
Alignment:
| Q |
18 |
aactaaaacccaacgcaactcaataatcaacgttctgctatcgtcttaaccctcaatggcaactagaagaactacaaaactaatcaaatcagttttcgcc |
117 |
Q |
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| T |
49015286 |
aactaaaacccaacgcaactcaataatcaacgttctgctatcgtcttaaccttcaatggcaactagaagaactacaaaactaatcaaatcagttttcgcc |
49015187 |
T |
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| Q |
118 |
gccgtaactgcttccagaaccagaacccctctcactcgttctctctccgccccactcttcaatggaagcttccttcacccttcacaaaacgcgagaaaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49015186 |
gccgtaactgcttccagaaccagaacccctctcactcgttctctctccgccccactcttcaatggaagcttccttcacccttcacaaaacgcgagaaaac |
49015087 |
T |
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| Q |
218 |
atcttccacgctctcagattatcgacccaaccaccaatgtcgcctccgcgaagttcctctctcactcttttactcgcaatttccacgcctatgct |
312 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49015086 |
atctttcacgctctcagattatcgacccaaccaccaatgtcgcctccgcgaagttcctctctcactcttttactcgcaatttccacgcctctgct |
49014992 |
T |
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