View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_low_38 (Length: 319)
Name: NF5689_low_38
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 32 - 302
Target Start/End: Original strand, 46238783 - 46239049
Alignment:
| Q |
32 |
atatattgaaagtttgatgtcgtggttgcattaatttaagcagtgaacgaggcgtaattcgatttccacatttagaaattcattgacctaatcatgtttt |
131 |
Q |
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| T |
46238783 |
atatattgaaagtttgatgtcgtggttgcattaatttaagcagtgaacgaggcgtaattcaatttccacatttagaaattcattgacctaatcatgtttt |
46238882 |
T |
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| Q |
132 |
caattttgatcggtgttcagaccaaaaatgtaattataaacatgttaagaatatctaaaaaccgttttgtcnnnnnnnnnnnnnnnntctaaaaaccgtg |
231 |
Q |
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| T |
46238883 |
caattttgattagtgttcagaccaaaaatgtaattataaacatgttaagaatatctaaaaaccgttttgtc----aaaaaaataaattctaaaaaccgtg |
46238978 |
T |
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| Q |
232 |
aaattaagaggattttttataaatttaagtaggattaagacttcaagaggtcgtctgattgctagggagac |
302 |
Q |
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| T |
46238979 |
aaattaagaggattttttataaatttaagtaggattaagactccaagagatcgtctgattgctagggagac |
46239049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 32 - 159
Target Start/End: Complemental strand, 46164452 - 46164330
Alignment:
| Q |
32 |
atatattgaaagtttgatgtcgtggttgcattaatttaagcagtgaacgaggcgtaattcgatttccacatttagaaattcattgacctaatcatgtttt |
131 |
Q |
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| T |
46164452 |
atatattgaaagtttgatgttgaggttgcataaagt-----agtgaacgagacgtaattccatttccgcatatagaaattcattcacctaattgtgtttt |
46164358 |
T |
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| Q |
132 |
caattttgatcggtgttcagaccaaaaa |
159 |
Q |
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| T |
46164357 |
caattttgatcagtgtttagacaaaaaa |
46164330 |
T |
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