View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_low_39 (Length: 316)
Name: NF5689_low_39
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 300
Target Start/End: Complemental strand, 35796180 - 35795891
Alignment:
| Q |
11 |
aaattcaaaaagggagctagagagatataattaaagttgttgccaggtagggtgctcttctctcatcctatctacttttcctaaaatttctacccattat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35796180 |
aaattcaaaaagggagctagagagatataattaaagttgttgccaggtagggtgctcttctctcatcctatctacttttcctaaaatttctacccattat |
35796081 |
T |
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| Q |
111 |
gaggtatagtggaactaagtactctctcaacttagtataaatagccatgtagttctctttttctctcaacctatttccaatcaaaagtggaagatttctc |
210 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35796080 |
gaggtatagtggaaccaagtactctctcaacttagtataaatagccatgtagttctctttgtctctcaacctatttccaatcaaaagtggaagatttctc |
35795981 |
T |
|
| Q |
211 |
ttagagtgagcttccacaatatggataatctaatatttacgataaggaatttatacactttggttcttttactttttgtactgtgtttta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35795980 |
ttagagtgagcttccacaatatggataatctaatatttaagataaggaatttatacactttggttcttttactttttgtactgtgtttta |
35795891 |
T |
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