View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5689_low_50 (Length: 287)
Name: NF5689_low_50
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_low_50 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 34478223 - 34477952
Alignment:
| Q |
1 |
tttccactgttaattttatcaatgtgacatgagattcaatctcacttannnnnnncaatgtaaagagagaattcaatggatttgtcgatgattatctttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34478223 |
tttccactgttaattttatcaatgtgacatgagattcaatctcacttatttttttcaatgtaaagagagaattcaatggatttgtcgatgattatctttc |
34478124 |
T |
|
| Q |
101 |
tagatttagataaatgagggtcaagtgtttcacaaccatcctnnnnnnngaggtgatcaaaatggcagccgatggataattaaccatgatcgggagacct |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34478123 |
tagatttagatagatgagggtcaagtgtttcacaaccatcctaaaaaaagaggtgatcaaaatggcagccgatggataattaaccatgaccgggagacct |
34478024 |
T |
|
| Q |
201 |
ttcttgttgggtgtataaattttgtaagccagtgcattagaaaaattttgtaaacaagaaaggcctccataa |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34478023 |
ttcttgttgggtgtataaattttgtaagccagtgcattagaaaaattttgtaaacaagaaaggcctccataa |
34477952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University