View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5689_low_52 (Length: 256)

Name: NF5689_low_52
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5689_low_52
NF5689_low_52
[»] chr8 (8 HSPs)
chr8 (7-147)||(9822803-9822944)
chr8 (7-146)||(39723907-39724047)
chr8 (7-147)||(9823219-9823360)
chr8 (7-147)||(13026690-13026831)
chr8 (7-147)||(22851445-22851586)
chr8 (7-146)||(39723457-39723597)
chr8 (7-147)||(13027140-13027280)
chr8 (39-104)||(22851887-22851951)
[»] chr4 (12 HSPs)
chr4 (7-146)||(36095872-36096011)
chr4 (7-147)||(50679282-50679423)
chr4 (7-147)||(36096333-36096474)
chr4 (7-147)||(45830056-45830195)
chr4 (7-146)||(43050662-43050802)
chr4 (7-103)||(56506476-56506573)
chr4 (7-147)||(43051110-43051251)
chr4 (72-146)||(45829114-45829188)
chr4 (7-147)||(50678834-50678974)
chr4 (54-146)||(47219064-47219156)
chr4 (10-103)||(56505751-56505845)
chr4 (7-127)||(11529223-11529344)
[»] chr1 (6 HSPs)
chr1 (21-147)||(48191243-48191369)
chr1 (7-147)||(49284913-49285054)
chr1 (7-147)||(6002751-6002893)
chr1 (7-147)||(6002292-6002433)
chr1 (15-147)||(48190805-48190938)
chr1 (7-147)||(49284464-49284604)
[»] scaffold0328 (2 HSPs)
scaffold0328 (7-147)||(6653-6794)
scaffold0328 (10-147)||(6210-6347)
[»] chr7 (5 HSPs)
chr7 (7-147)||(44599544-44599685)
chr7 (7-147)||(13863368-13863509)
chr7 (10-147)||(13863816-13863953)
chr7 (19-147)||(8643625-8643753)
chr7 (7-147)||(44599994-44600134)
[»] chr6 (2 HSPs)
chr6 (7-147)||(33829494-33829635)
chr6 (7-147)||(33829045-33829185)
[»] chr2 (8 HSPs)
chr2 (7-147)||(2639340-2639481)
chr2 (15-147)||(18296580-18296713)
chr2 (7-147)||(26841642-26841783)
chr2 (7-147)||(26842096-26842237)
chr2 (7-146)||(7591709-7591849)
chr2 (7-147)||(7591256-7591396)
chr2 (10-146)||(2638878-2639016)
chr2 (7-147)||(18296131-18296271)
[»] chr5 (4 HSPs)
chr5 (7-147)||(18817469-18817610)
chr5 (7-146)||(18817007-18817147)
chr5 (10-147)||(11351287-11351423)
chr5 (70-136)||(31570427-31570493)
[»] chr3 (3 HSPs)
chr3 (10-147)||(28702335-28702469)
chr3 (198-229)||(54535182-54535213)
chr3 (39-136)||(1928303-1928400)


Alignment Details
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 9822803 - 9822944
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  ||||||||||||||||||| |||| |||||||||| ||||| |||||   |||||||||| ||||| ||| ||| ||||||||||||     
T  9822803 atgtttttaaacgagcgattttgcaccatatctttttccccctttctgatttggaggccacccatgtgttttagtgatcatgtgtctgattttgatgacg 9822902  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    | ||||| ||||| ||||||||||||||||| ||||||||||    
T  9822903 tgtcttcatttaatgtttgccatgtgtgtaaatgtaattttt 9822944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 39724047 - 39723907
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  |||||||||||||||  || |||| |||||||||| ||||| ||||||| |||||||||| ||||||||| ||  ||||||||||||     
T  39724047 atgtttttaaacgagcgattttgcaccccatctttttccccctttctgatttggaggccctccatgtgttttagtgatgatgtgtttgattttgatgacg 39723948  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaatttt 146  Q
    | ||||| ||||| |||||||| |||||||| |||||||||    
T  39723947 tgtcttcatttaatgtttgccacgtgtgtaaatgtaatttt 39723907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 9823360 - 9823219
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  |||||||||||||||  || |||| |||||||||| ||||| ||||||  ||||  |||| ||||||||| ||| |||||||||||||    
T  9823360 atgtttttaaacgagcgattttgcaccccatctttttccccctttctgatttggaggccccccatgaattttagtgatgatgtgtctgattttgatgaca 9823261  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    | ||||| ||||| |||||||| |||||||| ||||||||||    
T  9823260 tgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 9823219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 13026690 - 13026831
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  |||||||||||||||  || |||| |||||||||| ||||| ||||||  |||||||||| ||||||||| ||| ||||||||||||     
T  13026690 atgtttttaaacgagcgattttgcaccccatctttttccccctttctgatttggaggccccccatgtgttttagtgatgatgtgtctgattttgatgacg 13026789  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    | ||||| ||||| |||||||| |||| ||| ||||||||||    
T  13026790 tgtcttcatttaatgtttgccacgtgtctaaatgtaattttt 13026831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 22851445 - 22851586
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||   ||||||||||||||  || |||| |||||||||| ||||| ||||||| |||||||||| ||||||||| ||| ||||||||||||     
T  22851445 atgtttttaaacaagcgattttgcaccccatctttttccccctttctgatttggaggccctccatgtgttttagtgatgatgtgtctgattttgatgacg 22851544  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    | | ||| ||||| |||||||| |||||||| ||||||||||    
T  22851545 tgtgttcatttaatgtttgccacgtgtgtaaatgtaattttt 22851586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 39723457 - 39723597
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  |||||||||||||||  || |||| |||||||||| ||||| ||||||  |||||||||| ||||||||| ||| | ||||||||||     
T  39723457 atgtttttaaacgagcgattttgcaccccatctttttccccctttctgatttggaggccccccatgtgttttagtgatgatgtgtctgtttttgatgacg 39723556  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaatttt 146  Q
    | ||||| ||||| ||||||||| ||||||| | |||||||    
T  39723557 tgtcttcatttaatgtttgccatatgtgtaaatataatttt 39723597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 13027280 - 13027140
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  |||||||||||||||  || |||| |||||||||| ||||| ||||||  ||||  ||| | |||||||| ||| ||||||||||||     
T  13027280 atgtttttaaacgagcgattttgcaccccatctttttccccctttctgatttggaggccccccatgaatttag-tgatgatgtgtctgattttgatgacg 13027182  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    | ||||| |||||  ||||||| |||||||| ||||||||||    
T  13027181 tgtcttcatttaatatttgccacgtgtgtaaatgtaattttt 13027140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 22851951 - 22851887
Alignment:
Q  39 ttttccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgac 104  Q
    |||||||||||||| ||||| ||||||  |||||||||| ||||||||| ||| ||||||||||||    
T  22851951 ttttccccctttctgatttggaggcccc-catgtgttttagtgatgatgtgtctgattttgatgac 22851887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 36095872 - 36096011
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatattttccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgacat 106  Q
    ||||||||||  ||||||||||||||| ||| |||| ||||||||| ||||| ||||||  ||||| |||| ||||||||| ||| |||||||||||| |    
T  36095872 atgtttttaaacgagcgattttgcaccctatctttttcccctttctgatttggaggccccccatgtattttagtgatgatgtgtctgattttgatgacgt 36095971  T
Q  107 atcttcgtttaaagtttgccatgtgtgtaagtgtaatttt 146  Q
     ||||| ||||| |||||||| |||||||| |||||||||    
T  36095972 gtcttcatttaatgtttgccacgtgtgtaaatgtaatttt 36096011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 50679423 - 50679282
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  |||||||||||||||  || |||| |||||||||| ||||| ||||||  |||||||||| ||||||||| ||| ||||||||||||     
T  50679423 atgtttttaaacgagcgattttgcaccccatctttttccccctttctgatttggaggccccccatgtgttttagtgatgatgtgtctgattttgatgacg 50679324  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    | ||||| ||||| |||||||| |||||||| ||||||||||    
T  50679323 tgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 50679282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 36096474 - 36096333
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatattttc-cccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  |||||||||||||||  || ||||  ||||||||| ||||| ||||||  |||||||||| ||||||||| ||| ||||||||||||     
T  36096474 atgtttttaaacgagcgattttgcaccccatcttttttcccctttctgatttggaggccccccatgtgttttagtgatgatgtgtctgattttgatgacg 36096375  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    | ||||| ||||| |||||||| |||||||| ||||||||||    
T  36096374 tgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 36096333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 45830195 - 45830056
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatattttccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgacat 106  Q
    ||||||||||  |||||||||||||||  || |||| ||||||||| ||||| || |||  ||| |||||| ||||||||| ||| ||||||||||||||    
T  45830195 atgtttttaaaagagcgattttgcaccccatctttttcccctttctgatttggagccccc-catatgttttagtgatgatgtgtctgattttgatgacat 45830097  T
Q  107 atcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
     ||||| ||||| |||||||| |||||||| ||||||||||    
T  45830096 gtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 45830056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 43050662 - 43050802
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  ||| |||||||||||  || |||| |||||||||| ||||| ||||||| |||||||||| ||||||||| ||  ||||||||||||     
T  43050662 atgtttttaaacgagtgattttgcaccccatctttttccccctttctgatttggaggccctccatgtgttttagtgatgatgtgtttgattttgatgacg 43050761  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaatttt 146  Q
    | ||||| ||||| ||||| || |||||||| |||||||||    
T  43050762 tgtcttcatttaatgtttgtcacgtgtgtaaatgtaatttt 43050802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 56506573 - 56506476
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatat-attttccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatga 103  Q
    |||||||||||||||||||||||||||  || ||||||||||||||| ||||||||||||  | |||||||| ||||||||| |||  ||||||||||    
T  56506573 atgtttttaattgagcgattttgcaccccatcattttccccctttctgatttgaaggcccctcgtgtgttttagtgatgatgtgtctaattttgatga 56506476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 43051251 - 43051110
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatat-attttccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  |||||||||||||||  ||  ||||||| |||||| ||||| ||||||  |||||||||| ||||||||| ||| | ||||||||||     
T  43051251 atgtttttaaacgagcgattttgcaccccatctttttccctctttctgatttggaggccccccatgtgttttagtgatgatgtgtctgtttttgatgacg 43051152  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    | ||||| ||||| |||| |||| ||||||| | ||||||||    
T  43051151 tgtcttcatttaatgtttaccatatgtgtaaatataattttt 43051110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 146
Target Start/End: Original strand, 45829114 - 45829188
Alignment:
Q  72 tgttttggtgatgatgcgtcagattttgatgacatatcttcgtttaaagtttgccatgtgtgtaagtgtaatttt 146  Q
    |||||| ||||||||| ||| |||||||||||||| ||||| ||||| |||||||| |||||||| |||||||||    
T  45829114 tgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatgtttgccacgtgtgtaaatgtaatttt 45829188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 50678834 - 50678974
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  |||||||||||||||  || |||| |||||||||| ||||| ||||||  ||||  ||| | |||||||| ||| ||||||||||||     
T  50678834 atgtttttaaacgagcgattttgcaccccatctttttccccctttctgatttggaggccccccatgaatttag-tgatgatgtgtctgattttgatgacg 50678932  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    | ||||| |||||  ||||||| |||||||| ||||||||||    
T  50678933 tgtcttcatttaatatttgccacgtgtgtaaatgtaattttt 50678974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 47219156 - 47219064
Alignment:
Q  54 atttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgacatatcttcgtttaaagtttgccatgtgtgtaagtgtaatttt 146  Q
    ||||| ||||||| |||||||||| ||||||||| ||  |||||||||||| | || || ||||| |||||||| |||||||| |||||||||    
T  47219156 atttggaggccctccatgtgttttagtgatgatgtgtttgattttgatgacgtgtcctcatttaatgtttgccacgtgtgtaaatgtaatttt 47219064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 56505751 - 56505845
Alignment:
Q  10 tttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatga 103  Q
    ||||||||||||| ||||||||||  || |||| ||||||||||  |||||||||||  |||||||||| ||||||||| ||| ||| |||||||    
T  56505751 tttttaattgagctattttgcaccccatctttttccccctttctggtttgaaggccccccatgtgttttagtgatgatgtgtctgatattgatga 56505845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 11529223 - 11529344
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatat-attttccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||| | |||||||||||||| || |||||||| |||| || ||||||| |||  ||| |||||| ||||||||| ||| ||||||||| |      
T  11529223 atgtttttaatcgtgcgattttgcaccacatcattttccctctttttagtttgaagtcccctcatatgttttagtgatgatgtgtctgattttgattagg 11529322  T
Q  106 tatcttcgtttaaagtttgcca 127  Q
    | ||||| ||||| ||||||||    
T  11529323 tgtcttcatttaatgtttgcca 11529344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 147
Target Start/End: Complemental strand, 48191369 - 48191243
Alignment:
Q  21 gcgattttgcaccatatattttccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgacatatcttcgtttaaag 120  Q
    |||||||||||||  || |||||||||||||| ||||| ||||||  |||||||||| ||||||||| ||| |||||||||||| | ||||| ||||| |    
T  48191369 gcgattttgcaccccatcttttccccctttctgatttggaggccccccatgtgttttagtgatgatgtgtctgattttgatgacgtgtcttcatttaatg 48191270  T
Q  121 tttgccatgtgtgtaagtgtaattttt 147  Q
    ||||||| |||||||| ||||||||||    
T  48191269 tttgccacgtgtgtaaatgtaattttt 48191243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 49285054 - 49284913
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||   ||||||||||||||  || |||| |||||||||| ||||| ||||||  |||||||||| ||||||||| ||| ||||||||||||     
T  49285054 atgtttttaaacaagcgattttgcaccccatctttttccccctttctgatttggaggccccccatgtgttttagtgatgatgtgtctgattttgatgacg 49284955  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    | ||||| ||||| |||||||| |||||||| ||||||||||    
T  49284954 tgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 49284913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 6002893 - 6002751
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctac-atgtgttttggtgatgatgcgtcagattttgatgac 104  Q
    ||||||||||  |||||||||||||||  || |||| |||||||||| ||||| ||||||  | ||||||||| ||||||||| ||| |||||||||||     
T  6002893 atgtttttaaacgagcgattttgcacctcatctttttccccctttctgatttggaggcccccccatgtgttttagtgatgatgtgtctgattttgatgat 6002794  T
Q  105 atatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
     | ||||| ||||| |||||||| |||||||| ||||||||||    
T  6002793 gtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 6002751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 6002292 - 6002433
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  |||||||||||||||  || |||| |||||||||| ||||| ||||||  ||||  |||| ||||||||| ||| ||||||||||||     
T  6002292 atgtttttaaacgagcgattttgcaccccatctttttccccctttctgatttggaggccccccatgaattttagtgatgatgtgtctgattttgatgacg 6002391  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    | | ||| ||||| |||||||| |||||||| ||||||||||    
T  6002392 tgttttcatttaatgtttgccacgtgtgtaaatgtaattttt 6002433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 48190805 - 48190938
Alignment:
Q  15 aattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgacatatcttcg 113  Q
    ||||| |||||||||||||  || |||| |||||||||||||||| ||||||  ||||  |||| ||||||||| ||| |||||||| ||| | ||||      
T  48190805 aattgtgcgattttgcaccccatctttttccccctttctaatttggaggccccccatgaattttagtgatgatgtgtctgattttgacgacgtgtcttaa 48190904  T
Q  114 tttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    ||||| ||||||||  ||||||| ||||||||||    
T  48190905 tttaatgtttgccacttgtgtaaatgtaattttt 48190938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 49284464 - 49284604
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  |||||||||||||||  || |||| |||||||||| ||||| ||||||  ||||  ||| | |||||||| ||| ||||||||||||     
T  49284464 atgtttttaaacgagcgattttgcaccccatctttttccccctttctgatttggaggccccccatgaatttag-tgatgatgtgtctgattttgatgacg 49284562  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    | ||||| |||||  ||||||| |||||||| ||||||||||    
T  49284563 tgtcttcatttaatatttgccacgtgtgtaaatgtaattttt 49284604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 6794 - 6653
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  |||||||||||||||  || |||| |||||||||| ||||| ||||||  |||||||||| ||||||||| ||| ||||||||||||     
T  6794 atgtttttaaacgagcgattttgcaccccatctttttccccctttctgatttggaggccccccatgtgttttagtgatgatgtgtctgattttgatgacg 6695  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    | ||||| ||||| |||||||| |||||||| ||||||||||    
T  6694 tgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 6653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 147
Target Start/End: Original strand, 6210 - 6347
Alignment:
Q  10 tttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgacatat 108  Q
    ||||||| ||||||||||||||||  || |||| |||||||||| ||||| ||||||  |||||||||| ||||||||| ||| |||||||||||| | |    
T  6210 tttttaaatgagcgattttgcaccccatctttttccccctttctgatttggaggcccc-catgtgttttagtgatgatgtgtctgattttgatgacttgt 6308  T
Q  109 cttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    |||| ||||| ||||||||  ||||||| ||||||||||    
T  6309 cttcatttaatgtttgccacatgtgtaaatgtaattttt 6347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 44599544 - 44599685
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  |||||||||||||||  || |||| |||||||||| ||||| ||||||  |||||||||| ||||||||| ||| ||||||||||||     
T  44599544 atgtttttaaacgagcgattttgcaccccatctttttccccctttctgatttggaggccccccatgtgttttagtgatgatgtgtctgattttgatgacg 44599643  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    | ||||| ||||| |||||||| |||||||| ||||||||||    
T  44599644 tgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 44599685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 13863368 - 13863509
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatattttcccc-ctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  |||||||||||||||  || |||| ||| |||||| ||||| ||||||  |||||||||| ||||||||| ||| ||||||||||||     
T  13863368 atgtttttaaacgagcgattttgcaccccatctttttccctctttctgatttggaggccccccatgtgttttagtgatgatgtgtctgattttgatgacg 13863467  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    | ||||| ||||| |||||||| |||||||| ||||||||||    
T  13863468 tgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 13863509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 147
Target Start/End: Complemental strand, 13863953 - 13863816
Alignment:
Q  10 tttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgacatat 108  Q
    |||||||  |||||||||||||||  || |||| |||||||||| ||||| ||||||   ||||||||| ||||||||| ||| |||||||||||||| |    
T  13863953 tttttaaacgagcgattttgcaccccatctttttccccctttctgatttggaggccccg-atgtgttttagtgatgatgtgtctgattttgatgacatgt 13863855  T
Q  109 cttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    |||| ||||| |||||||| |||||||| ||||||||||    
T  13863854 cttcatttaatgtttgccacgtgtgtaaatgtaattttt 13863816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 8643753 - 8643625
Alignment:
Q  19 gagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgacatatcttcgttta 117  Q
    |||||||||||||||  || |||| |||||||||| ||||||||||||   ||||||||| | ||||||| ||  |||||||||||||| ||||| ||||    
T  8643753 gagcgattttgcaccccatctttttccccctttctgatttgaaggcccct-atgtgttttagcgatgatgtgtttgattttgatgacatgtcttcattta 8643655  T
Q  118 aagtttgccatgtgtgtaagtgtaattttt 147  Q
    |  ||||||| |||||||| | ||||||||    
T  8643654 atttttgccacgtgtgtaaatataattttt 8643625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 44600134 - 44599994
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  |||||||||||||||  || |||| |||||||||| ||||| ||||||  ||||  ||| | |||||||| ||| ||||||||||||     
T  44600134 atgtttttaaacgagcgattttgcaccccatctttttccccctttctgatttggaggccccccatgaatttag-tgatgatgtgtctgattttgatgacg 44600036  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    | ||||| |||||  ||||||| |||||||| ||||||||||    
T  44600035 tgtcttcatttaatatttgccacgtgtgtaaatgtaattttt 44599994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 33829635 - 33829494
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  |||||||||||||||  || |||| |||||||||| ||||| ||||||  |||||||||| ||||||||| ||| ||||||||||||     
T  33829635 atgtttttaaacgagcgattttgcaccccatctttttccccctttctgatttggaggccccccatgtgttttagtgatgatgtgtctgattttgatgacg 33829536  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    | ||||| ||||| |||||||| |||||||| ||||||||||    
T  33829535 tgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 33829494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 33829045 - 33829185
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  |||||||||||||||  || |||| |||||||||| ||||| ||||||  ||||  ||| | |||||||| ||| ||||||||||||     
T  33829045 atgtttttaaacgagcgattttgcaccccatctttttccccctttctgatttggaggccccccatgaatttag-tgatgatgtgtctgattttgatgacg 33829143  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    | ||||| |||||  ||||||| |||||||| ||||||||||    
T  33829144 tgtcttcatttaatatttgccacgtgtgtaaatgtaattttt 33829185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 2639481 - 2639340
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  |||||||||||||||  || |||| |||||||||| ||||| ||||||  |||||||||| | ||||||| ||| ||||||||||||     
T  2639481 atgtttttaaacgagcgattttgcaccccatctttttccccctttctgatttggaggccccccatgtgttttagcgatgatgtgtctgattttgatgacg 2639382  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    | ||||| ||||| |||||||| |||||||| ||||||||||    
T  2639381 tgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 2639340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 18296713 - 18296580
Alignment:
Q  15 aattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgacatatcttcg 113  Q
    ||||| |||||||||||||  || |||| |||||||||| ||||| ||||||  |||||||||| ||||||||| ||| |||||||||||| | |||||     
T  18296713 aattgtgcgattttgcaccccatctttttccccctttctgatttggaggccccccatgtgttttagtgatgatgtgtctgattttgatgacgtgtcttca 18296614  T
Q  114 tttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    ||||| |||||||| |||||||| ||||||||||    
T  18296613 tttaatgtttgccacgtgtgtaaatgtaattttt 18296580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 26841642 - 26841783
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  |||||||||||||||  || |||| |||||||||| ||||| ||||||  ||||  |||| ||||||||| ||| ||||||||||||     
T  26841642 atgtttttaaacgagcgattttgcaccccatctttttccccctttctgatttggaggccccccatgaattttagtgatgatgtgtctgattttgatgacg 26841741  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    | ||||| ||||| |||||||| |||||||| ||||||||||    
T  26841742 tgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 26841783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 26842237 - 26842096
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  |||||||||||||||  || |||| |||||||||| ||||| ||||||  |||||||||| ||||||||| ||  ||||||||||||     
T  26842237 atgtttttaaacgagcgattttgcaccccatctttttccccctttctgatttggaggccccccatgtgttttagtgatgatgtgtatgattttgatgacg 26842138  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    | ||||| ||||| |||| ||| |||||||| ||||||||||    
T  26842137 tgtcttcatttaatgttttccacgtgtgtaaatgtaattttt 26842096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 7591849 - 7591709
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  |||||||||||||||  || |||| |||||||||| ||||| ||||||   | || |||| ||||||||| ||| ||||||||||||     
T  7591849 atgtttttaaacgagcgattttgcacctcatttttttccccctttctgatttggaggccccctacgtattttagtgatgatgtgtctgattttgatgacg 7591750  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaatttt 146  Q
    | ||||| ||||| |||||||| |||||||| |||||||||    
T  7591749 tgtcttcatttaatgtttgccacgtgtgtaaatgtaatttt 7591709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 7591256 - 7591396
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatat-attttccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  |||||||||||||||  ||  |||||||||||||| ||||| ||||||  |||||||||| | ||||||| ||| |||||||||| |     
T  7591256 atgtttttaaacgagcgattttgcaccccatctttttccccctttctgatttggaggccc-ccatgtgttttagcgatgatgtgtctgattttgatggcg 7591354  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    | ||||| ||||| ||||||||  ||||||| ||||||||||    
T  7591355 tgtcttcatttaatgtttgccacatgtgtaaatgtaattttt 7591396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 146
Target Start/End: Original strand, 2638878 - 2639016
Alignment:
Q  10 tttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctac-atgtgttttggtgatgatgcgtcagattttgatgacata 107  Q
    |||||||  |||||||||||||||  || |||| |||||||||| ||||| ||||||  | | || |||| ||||||||| ||| |||||||||||| |     
T  2638878 tttttaaacgagcgattttgcaccccatctttttccccctttctgatttggaggcccccccacgtattttagtgatgatgtgtctgattttgatgacgtg 2638977  T
Q  108 tcttcgtttaaagtttgccatgtgtgtaagtgtaatttt 146  Q
    ||||| ||||| |||||||| |||||||| |||||||||    
T  2638978 tcttcatttaatgtttgccacgtgtgtaaatgtaatttt 2639016  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 18296131 - 18296271
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatattttcccccttt-ctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  |||||||||||||||  || |||| ||||||| || ||||| ||||||  ||||  ||| | |||||||| ||| ||||||||||||     
T  18296131 atgtttttaaacgagcgattttgcaccccatctttttccccttttctgatttggaggccccccatgaatttag-tgatgatgtgtctgattttgatgacg 18296229  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    | ||||| |||||  ||||||| |||||||| ||||||||||    
T  18296230 tgtcttcatttaatatttgccacgtgtgtaaatgtaattttt 18296271  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 18817610 - 18817469
Alignment:
Q  7 atgtttttaattgagcgattttgcaccatatatttt-ccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgaca 105  Q
    ||||||||||  |||||||||||||||  || |||| |||||||||| ||||| || |||  |||||||||| | ||||||| ||| ||||||||||||     
T  18817610 atgtttttaaacgagcgattttgcaccccatctttttccccctttctgatttggagaccccccatgtgttttagcgatgatgtgtctgattttgatgacg 18817511  T
Q  106 tatcttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    | ||||| ||||| |||||||| |||||||| ||||||||||    
T  18817510 tgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 18817469  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 18817007 - 18817147
Alignment:
Q  7 atgtttttaattgagcgattttgca--ccatatattttccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgac 104  Q
    ||||||||||  |||||||||||||  |||| | |||||||||||||| ||||| ||||||  || || |||| ||||||||| ||| ||||||||||||    
T  18817007 atgtttttaaacgagcgattttgcatcccatct-ttttccccctttctgatttggaggccccccacgtattttagtgatgatgtgtctgattttgatgac 18817105  T
Q  105 atatcttcgtttaaagtttgccatgtgtgtaagtgtaatttt 146  Q
     | ||||| ||||| |||||||| |||||||| |||||||||    
T  18817106 gtgtcttcatttaatgtttgccacgtgtgtaaatgtaatttt 18817147  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 147
Target Start/End: Complemental strand, 11351423 - 11351287
Alignment:
Q  10 tttttaattgagcgattttgcaccatatattttccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgacatatc 109  Q
    |||||||  |||||||||| ||||  || |||||||||||| | ||||| ||||||  |||||||||| || |||||| ||| |||||||||||| | ||    
T  11351423 tttttaaacgagcgattttacaccccatcttttccccctttatgatttggaggcccc-catgtgttttagtaatgatgtgtctgattttgatgacgtgtc 11351325  T
Q  110 ttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    ||| ||||| |||||||| |||||||| ||||||||||    
T  11351324 ttcatttaatgtttgccacgtgtgtaaatgtaattttt 11351287  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 31570493 - 31570427
Alignment:
Q  70 tgtgttttggtgatgatgcgtcagattttgatgacatatcttcgtttaaagtttgccatgtgtgtaa 136  Q
    |||||||| ||||||||| ||| |||||||||||||| ||||| |||||  |||| |||||||||||    
T  31570493 tgtgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaa 31570427  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 147
Target Start/End: Original strand, 28702335 - 28702469
Alignment:
Q  10 tttttaattgagcgattttgcaccatatattttccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgacatatc 109  Q
    |||||||||||| ||||||||||   ||  ||||||| ||||| ||||||||||||   |||| |||||||||||||| ||| |||||| ||||||| ||    
T  28702335 tttttaattgagtgattttgcacacaatcctttcccc-tttctgatttgaaggcccct-atgt-ttttggtgatgatgtgtctgattttaatgacatgtc 28702431  T
Q  110 ttcgtttaaagtttgccatgtgtgtaagtgtaattttt 147  Q
    ||| ||||| | ||||||||||| ||| ||||| ||||    
T  28702432 ttcatttaatgcttgccatgtgtctaaatgtaactttt 28702469  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 229
Target Start/End: Complemental strand, 54535213 - 54535182
Alignment:
Q  198 caatggcaccttccgccaattcctccggcggt 229  Q
    ||||||||||||||||||||||||||||||||    
T  54535213 caatggcaccttccgccaattcctccggcggt 54535182  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 1928400 - 1928303
Alignment:
Q  39 ttttccccctttctaatttgaaggccctacatgtgttttggtgatgatgcgtcagattttgatgacatatcttcgtttaaagtttgccatgtgtgtaa 136  Q
    |||||||| |||||  |||||||| ||  ||| |||||| ||||||||| ||| |||||||||||  | ||||| |||||  |||| |||||||||||    
T  1928400 ttttccccttttctggtttgaagggcccccatatgttttagtgatgatgtgtctgattttgatgatgtgtcttcatttaatttttgacatgtgtgtaa 1928303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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