View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_low_54 (Length: 253)
Name: NF5689_low_54
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_low_54 |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 34787141 - 34786915
Alignment:
| Q |
1 |
atttaccttttatataaaacaaaacacaattccctttcacttttcaccccaccttttatggagnnnnnnnnn-caagtggcattcacccctctttctggn |
99 |
Q |
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| T |
34787141 |
atttaccttttatataaaacaaaacacaattccctttcacttttcaccccaccttttatggagaaaaaaaaaacaagtggcattcacccctctttctgga |
34787042 |
T |
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| Q |
100 |
nnnnnnnncaattcgcacttcagctttcaacaaattctcggtgttctcttaatagtttttgtgttatttctcttaatattttcacgtgtttgtgttttaa |
199 |
Q |
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| T |
34787041 |
aaaaaaa-caattcgcacttcagctttcaacaaattctcggtgttctcttaatagtttttgtgttatttctcttaatattttcacgtgtttgtgttttaa |
34786943 |
T |
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| Q |
200 |
ttgtttactcaagtcattgattgaggtt |
227 |
Q |
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|||||||||||| ||||||||||||||| |
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| T |
34786942 |
ttgtttactcaaatcattgattgaggtt |
34786915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34787275 - 34787239
Alignment:
| Q |
1 |
atttaccttttatataaaacaaaacacaattcccttt |
37 |
Q |
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| T |
34787275 |
atttaccttttatataaaacaaaacacaattcccttt |
34787239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 24128006 - 24128068
Alignment:
| Q |
1 |
atttaccttttatataaaacaaaacacaattccctttcacttttcac-cccaccttttatgga |
62 |
Q |
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| T |
24128006 |
atttatcttttatataaaacaaaacacaatcccctttcacttttcactccaaccttttatgga |
24128068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 24128153 - 24128201
Alignment:
| Q |
140 |
gtgttctcttaatagtttttgtgttatttctcttaatattttcacgtgt |
188 |
Q |
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| T |
24128153 |
gtgttctcttaatcgtttttgtgttattcctcttaatattttcatgtgt |
24128201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 40606929 - 40606877
Alignment:
| Q |
1 |
atttaccttttatataaaacaaaacacaat-tccctttcacttttcaccccac |
52 |
Q |
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| T |
40606929 |
atttaccctttatataaaacaatacacaatcaccctttcccttttcaccccac |
40606877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 33573646 - 33573693
Alignment:
| Q |
3 |
ttaccttttatataaaacaaaacacaattccctttcacttttcacccc |
50 |
Q |
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| T |
33573646 |
ttaccctttatataaaacaaaacaaaattacccttcacttttcacccc |
33573693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 39530 - 39488
Alignment:
| Q |
9 |
tttatataaaacaaaacacaatt-ccctttcacttttcacccc |
50 |
Q |
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| T |
39530 |
tttatataaaacaaaacacaattaccttttcacttttcacccc |
39488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 19711944 - 19711886
Alignment:
| Q |
1 |
atttaccttttatataaaacaaaacacaat-tccctttcacttttcacc-ccacctttt |
57 |
Q |
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||||||| ||||||||||||||| |||||| ||||||||||||||||| ||||||||| |
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| T |
19711944 |
atttaccctttatataaaacaaaccacaatcaccctttcacttttcaccgccacctttt |
19711886 |
T |
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