View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_low_57 (Length: 251)
Name: NF5689_low_57
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_low_57 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 8624435 - 8624671
Alignment:
| Q |
14 |
agatccaggtactattacccttttgcttcaagatcaagttggtggacttcaagctacaaaggatgatggtaaaacatggattactattcagcctattgag |
113 |
Q |
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| T |
8624435 |
agatccaggtactattacccttttgcttcaagatcaagttggtggacttcaagctacaaaggatgatggtaaaacatggattactattcagcctattgag |
8624534 |
T |
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| Q |
114 |
gatgcttttgttgttaaccttggagatcatggtcatgtgagtatatatattaattgattattaaccactaactaacttgataaaaaacctcccaaacact |
213 |
Q |
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| T |
8624535 |
gatgcttttgttgttaaccttggagatcatggtcatgtgagtatatatattaattgattattaaccactaactaacttgataaaaaaactcccaaacact |
8624634 |
T |
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| Q |
214 |
atcttaaagatgggtattggtcatctactcatccatgt |
251 |
Q |
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| T |
8624635 |
atcttaaagat-ggtattggtcatctactcatccatgt |
8624671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 32068310 - 32068178
Alignment:
| Q |
24 |
actattacccttttgcttcaagatcaagttggtggacttcaagctacaaaggatgatggtaaaacatggattactattcagcctattgaggatgcttttg |
123 |
Q |
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| T |
32068310 |
actattactctattgcttcaagaccaagtgggtggtcttcaagctacaagagataatggtaagacatggatcactgttaagccaattgaaggtgcttttg |
32068211 |
T |
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| Q |
124 |
ttgttaaccttggagatcatggtcatgtgagta |
156 |
Q |
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| T |
32068210 |
ttgtcaatattggagatcatggtcatgtgagta |
32068178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 32091641 - 32091509
Alignment:
| Q |
24 |
actattacccttttgcttcaagatcaagttggtggacttcaagctacaaaggatgatggtaaaacatggattactattcagcctattgaggatgcttttg |
123 |
Q |
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| T |
32091641 |
actattactctattgcttcaagaccaagtgggtggtcttcaagctaccaaagataatggtaagacatggatcactgttcaaccagttgaaggtgcttttg |
32091542 |
T |
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| Q |
124 |
ttgttaaccttggagatcatggtcatgtgagta |
156 |
Q |
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| T |
32091541 |
ttgttaatcttggagaccatggtcatgtgagta |
32091509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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