View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_low_60 (Length: 248)
Name: NF5689_low_60
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 35796630 - 35796406
Alignment:
| Q |
7 |
aagaaaatctctttaagtaaatatcaagattaatatccgagcccttgttgaagaacactcgtaaaccttaacaaaataaataaatttgaagtttgaaatt |
106 |
Q |
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| T |
35796630 |
aagaaaatctctttaagtaaatatcaagattaatatgcgagtccttgttgaagaacactcgtaaaccttaacaaaataaataaatttgaagtttgaaatt |
35796531 |
T |
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| Q |
107 |
ttttacatttcccttgcttttatatgaagaggaatgtaatgatataattaaagggtaaacaagagcttcttnnnnnnngggcaaacaagagtttttaaaa |
206 |
Q |
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| T |
35796530 |
ttttacatttcccttgc--ttatatgaagaggaatgtaatgatataattaaagggtaaacaagagcttcttaaaaaaagggcaaacaagagtttttaaaa |
35796433 |
T |
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| Q |
207 |
agatattaatttgtatccaattaccgc |
233 |
Q |
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|||||||||||||||| |||||||||| |
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| T |
35796432 |
agatattaatttgtattcaattaccgc |
35796406 |
T |
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