View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5689_low_62 (Length: 247)
Name: NF5689_low_62
Description: NF5689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5689_low_62 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 45313141 - 45312915
Alignment:
| Q |
18 |
atattaacaatcaggaaagtttcataacttgagggagagaagaccaggctgtggaatgtacatatttcaatacttgcatgtgtgtgtaggtttcaaatct |
117 |
Q |
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| T |
45313141 |
atattaacaatcaggaaagtttcataacttgagggagagaagaccaggctgtggaatgtacatatttcaatacttgcatgtgtgtgtaggtttcaaatct |
45313042 |
T |
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| Q |
118 |
atatatgtatttgaaaatcagtgacttgagctattctagttctgaattctgatgttgtacttagcatattgaaatggccatattgccagttttggccatc |
217 |
Q |
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| T |
45313041 |
atatatgtatttgaaaatcagtgacttgagctattctagttctgaattctgatgttgtacttagcatattgaaatggccatatttccagttttggccatc |
45312942 |
T |
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| Q |
218 |
atttaccattttttgttacttgatagg |
244 |
Q |
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| T |
45312941 |
atttaccattttttgttacttgatagg |
45312915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 54632471 - 54632687
Alignment:
| Q |
19 |
tattaacaatcaggaaagtttcataacttgagggagagaagaccaggctgtggaatgtacatatttcaatacttgcatgtgtgtg--------taggttt |
110 |
Q |
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| T |
54632471 |
tattaacaatcagggaagtttcataacttgaaggaaagaataccaggctgtggaatgtacaaatttcaatacgtgcatgtctgtgagtttttgtatgttt |
54632570 |
T |
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| Q |
111 |
caaatctatatatgtatttgaaaatcagtgactt-gagctattctagttctgaattctgatgttgtacttagcatattgaaatggccatattgccagttt |
209 |
Q |
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| T |
54632571 |
caaatctttatatttatttgaaaatcagtgactttgggcaattctaattctgaattctgatgtcgtaccgagcatattgaaatggccata--gccagttt |
54632668 |
T |
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| Q |
210 |
tggccatcatttaccattt |
228 |
Q |
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| T |
54632669 |
tggccatcatttaccattt |
54632687 |
T |
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